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Commits on Jul 1, 2019

• added the description of "SA" tag. Closes lh3#438

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  e026e18

Commits on Jun 11, 2019

• compatibility with GenBank GTP (resolves $422)

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  58c2251

Commits on Jun 7, 2019

• test if index is built for lh3#413

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  03dc8d5

Commits on Jun 6, 2019

• added FAQ

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  5cb61f8

Commits on May 12, 2019

• Er... Tavis doesn't have python 3.7.

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  c16a174

• test python 3.7 instead of 3.6

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  4bd5a01

Commits on May 10, 2019

• r943: allow long ref name for --split-index

  Show description for 05974c8
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  05974c8

Commits on May 5, 2019

• Release minimap2-2.17 (r941)

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Commits on May 4, 2019

• r940: added the splice:hq preset

  Show description for 6762368
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  6762368

Commits on May 1, 2019

• r938: added --sam-hit-only; resolved lh3#377

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• r937: enlarge mm_mapopt_t::flag to 64 bits

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  97f67a2

• potentially fix issue lh3#372

  Show description for 1895555
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• r935: fixed a cigar like 5I6D7I; resolved lh3#392

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Commits on Apr 29, 2019

• r934: --junc-bed to read BED12

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Commits on Apr 28, 2019

• r933: resume versioning

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  f64e426

• updated manpage

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  2bb8cbb

• --junc-bed apparently working

  Show description for e80759c
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  e80759c

• fixed a few simple bugs and leaks

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  f4c844b

• implemented in exts; testing is the next

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• gff2bed to output junction BED

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• BED I/O

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Commits on Feb 28, 2019

• manpage was wrongly marked as "dirty"

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  169216b

• Release minimap2-2.16 (r922)

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  6b391e3

Commits on Feb 27, 2019

• r921: output unmapped reads in full PAF

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• r917: added --max-chain-iter to avoid worst case

  Show description for d431dc0
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• make it explicit that -x is preferred for prebuilt

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• r917: fixed a bug in command-line parsing

  Show description for ea84fc0
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  ea84fc0

Commits on Feb 17, 2019

• r916: support long cs in sam-to-paf conversion

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  19208fb

Commits on Feb 14, 2019

• r915: fixed a bug caused by the latest change

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  e02bebd

Commits on Feb 13, 2019

• r914: fixed two harmless division by 0

  Show description for 32ab6ce
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  32ab6ce

Commits on Feb 5, 2019

• r913: output tag "rl", length of unseedable regs

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  1739a26

Commits on Jan 29, 2019

• added mappy.Aligner.seq_names to return seq names

  Show description for aaf3233
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  aaf3233

• r911: option -o to output to file (lh3#319)

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• r910: meaningful error message (lh3#320)

  Show description for eba237f
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  eba237f

Commits on Jan 26, 2019

• updated citation with page numbers

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  a8e1e3c

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