ChAMP package is designed for conduct DNA methylation array analysis, providing service from data loading, to final gene set enrichment analysis .e.g. This repo includes a few extra functions to visualize ChAMP input. Click here to go to the original ChAMP package.
Install Code:
git clone https://github.com/marromesc/ChAMP.git
R CMD INSTALL ChAMP
Forked version: 2.29.1, which support EPICv2, but it must be used along with ChAMPdata >= 2.23.1