To explain clinical BERT model predictions, we present an approach which leverages integrated gradients to attribute events in medical records that lead to an outcome prediction.

Find secrets with Gitleaks 🔑

A Lightweight Recommendation System

Run your GitHub Actions locally 🚀

Python implementation of the original R sensemakr package: https://github.com/carloscinelli/sensemakr

A Python library for creating Github-style badges

pytest plugin for distributed testing and loop-on-failures testing modes.

This package helps wrangle the clinical data in IBD Plexus. IBD Plexus is a data exchange platform designed to accelerate research toward finding cures for Inflammatory Bowel Disease (IBD). To lear…

A system for automating the design of predictive modeling pipelines tailored for clinical prognosis.

Database documentation built easy

Visual analysis and diagnostic tools to facilitate machine learning model selection.

The Virtual Feature Store. Turn your existing data infrastructure into a feature store.

Uses tokenized query returned by python-sqlparse and generates query metadata

Top open source software from the top 50 pharmaceutical companies

A formatter for finding and removing unused import statements.

📝 An awesome Data Science repository to learn and apply for real world problems.

Awesome papers on Feature Selection

Probably the best curated list of data science software in Python.

Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022)

A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of biomedical datasets relating to drug discovery: a knowledge…

A collection of research papers and software related to explainability in graph machine learning.

A curated list of awesome open source libraries to deploy, monitor, version and scale your machine learning

Mirror of mypy for pre-commit

Model explainability that works seamlessly with 🤗 transformers. Explain your transformers model in just 2 lines of code.

An Awesome List of projects using the pyproject.toml Python configuration file.

Set of boilerplate scripts describing the normalized script pattern that GitHub uses in its projects.

Simple and powerful factories for mock data generation

Automatically format your Python docstrings to conform with PEP 8 and PEP 257

Black for Python docstrings and reStructuredText (rst).