Merge branch 'perma-id:master' into master

.gitignore

@@ -4,3 +4,4 @@
 *.sw[nop]
 *~
 .DS_Store
+.vscode

.htaccess

@@ -3,5 +3,6 @@
 Options +FollowSymLinks
 RewriteEngine on
 
-# redirect here vs in a UN directory due to case insensitive file systems issue
+# special directory redirects due to case insensitive file systems issues
+RewriteRule ^AIRO(.*)$ /airo$1
 RewriteRule ^UN(.*)$ /un$1

303/.htaccess

@@ -1,7 +1,23 @@
 # Rewrite engine setup
 RewriteEngine On
+DirectorySlash Off
+RewriteOptions AllowNoSlash
 
-RewriteCond %{HTTP:Accept} text/html [NC]
-RewriteRule ^$ https://github.com/athalhammer/303voc/ [R=303,L]
+# All machine-readable versions should be referred to by a generic document
+RewriteCond %{REQUEST_FILENAME} -d
+RewriteCond %{HTTP:Accept} text/turtle [NC,OR]
+RewriteCond %{HTTP:Accept} application/ld\+json [NC]
+RewriteRule . https://w3id.org/303/doc [R=303,L]
 
-RewriteRule ^$ https://athalhammer.github.io/303voc/303.ttl [R=303,L]
+# Default to the HTML representation. 
+# As it is very different from the machine readable representations --> direct 303, no link via generic document
+RewriteCond %{REQUEST_FILENAME} -d
+RewriteRule . https://github.com/athalhammer/303voc/ [R=303,L]
+
+# Turtle version of generic doc
+RewriteCond %{HTTP:Accept} text/turtle [NC]
+RewriteRule ^doc$ https://athalhammer.github.io/303voc/303.ttl [R=302,L]
+
+# JSON-LD version of generic doc
+RewriteCond %{HTTP:Accept} application/ld\+json [NC]
+RewriteRule ^doc$ https://athalhammer.github.io/303voc/303.jsonld [R=302,L]

5s-crate/.htaccess

@@ -0,0 +1,15 @@
+AddType application/ld+json .jsonld
+
+RewriteEngine on
+
+# Documentation/paper
+RewriteRule ^$ https://trefx.uk/5s-crate/ [R=303,L]
+
+
+# Crate profile (versioned)
+RewriteCond %{HTTP_ACCEPT} ^.*application/ld\+json.*
+# JSON-LD manifest
+RewriteRule ^(\d+\.\d+)$ https://trefx.uk/5s-crate/$1/ro-crate-metadata.jsonld [R=302,L]
+# HTML as default
+RewriteRule ^(\d+\.\d+)$ https://trefx.uk/5s-crate/$1/ [R=302,L]
+

5s-crate/README.md

@@ -0,0 +1,14 @@
+# Five Saes RO-Crate profile
+
+Currently managed by the [TRE-FX](https://trefx.uk/) project.
+
+Primary contacts: 
+- Stian Soiland-Reyes @stain
+- Tom Giles @thomgiles
+
+Permalinks (examples):
+ * https://w3id.org/5s-crate
+ * https://w3id.org/5s-crate/0.4
+
+
+

APD/.htaccess

@@ -0,0 +1,49 @@
+# Turn off MultiViews
+Options -MultiViews
+
+# Directive to ensure *.rdf files served as appropriate content type,
+# if not present in main apache config
+AddType application/rdf+xml .rdf
+AddType application/rdf+xml .owl
+AddType text/turtle .ttl
+AddType application/n-triples .nt
+AddType application/n-quads .nq
+AddType application/ld+json .json
+AddType application/ld+json .jsonld
+
+RewriteEngine on
+
+# Rewrite rule to serve HTML
+RewriteCond %{HTTP_ACCEPT} !application/rdf\+xml.*(text/html|application/xhtml\+xml)
+RewriteCond %{HTTP_ACCEPT} text/html [OR]
+RewriteCond %{HTTP_ACCEPT} application/xhtml\+xml [OR]
+RewriteCond %{HTTP_USER_AGENT} ^Mozilla/.*
+RewriteRule ^$ https://traitecoevo.github.io/APD/index.html [R=303,L]
+
+# Rewrite rule to serve JSON-LD
+RewriteCond %{HTTP_ACCEPT} application/ld\+json
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.json [R=303,L]
+
+# Rewrite rule to serve RDF/XML
+# RewriteCond %{HTTP_ACCEPT} \*/\* [OR]
+# RewriteCond %{HTTP_ACCEPT} application/rdf\+xml
+# RewriteRule ^$ https://traitecoevo.github.io/APD/APD.xml [R=303,L]
+
+# Rewrite rule to serve N-Triples
+RewriteCond %{HTTP_ACCEPT} application/n-triples
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.nt [R=303,L]
+
+# Rewrite rule to serve N-Quads
+RewriteCond %{HTTP_ACCEPT} application/n-quads
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.nq [R=303,L]
+
+# Rewrite rule to serve TTL
+RewriteCond %{HTTP_ACCEPT} text/turtle [OR]
+RewriteCond %{HTTP_ACCEPT} text/\* [OR]
+RewriteCond %{HTTP_ACCEPT} \*/turtle
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.ttl [R=303,L]
+
+# Default response
+# ---------------------------
+# default response is the documentation page
+RewriteRule ^$ https://traitecoevo.github.io/APD/ [R=303,L]

APD/README.md

@@ -0,0 +1,21 @@
+This W3ID provides a persistent URI namespace for the AusTraits Plant Dictionary (APD).
+# AusTraits Plant Dictionary (APD)
+The AusTraits Plant Dictionary (APD) is a vocabulary that formally defines the more than 500 plant trait concepts used by [AusTraits](https://austraits.org), a database of Australian plant traits. Over time it is expected to expand to include additional trait concepts. Each trait definition has been reviewed by multiple people and includes references and links to identical/similar traits in other trait databases whenever possible. The APD includes machine-readable formats and endpoints, allowing the traits to be readily re-used by other databases.
+
+## Vocabularies
+
+* https://w3id.org/APD/traits
+* https://w3id.org/APD/glossary
+* https://w3id.org/APD/ontology/
+
+
+## Homepage
+
+* https://w3id.org/APD/
+* http://austraits.org
+* https://github.com/traitecoevo/APD/
+
+## Contact
+
+Space administered by Daniel Falster (http://github.com/dfalster) via <[email protected]>
+

APD/glossary/.htaccess

@@ -0,0 +1,44 @@
+# Turn off MultiViews
+Options -MultiViews
+
+# Directive to ensure *.rdf files served as appropriate content type,
+# if not present in main apache config
+AddType application/rdf+xml .rdf
+AddType application/rdf+xml .owl
+AddType text/turtle .ttl
+AddType application/n-triples .nt
+AddType application/n-quads .nq
+AddType application/ld+json .json
+AddType application/ld+json .jsonld
+
+RewriteEngine on
+
+# Rewrite rule to serve HTML
+RewriteCond %{HTTP_ACCEPT} !application/rdf\+xml.*(text/html|application/xhtml\+xml)
+RewriteCond %{HTTP_ACCEPT} text/html [OR]
+RewriteCond %{HTTP_ACCEPT} application/xhtml\+xml [OR]
+RewriteCond %{HTTP_USER_AGENT} ^Mozilla/.*
+RewriteRule ^(.+)$ https://traitecoevo.github.io/APD/#$1 [R=303,L,NE]
+
+# Rewrite rule to serve JSON-LD
+RewriteCond %{HTTP_ACCEPT} application/ld\+json
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.json [R=303,L]
+
+# Rewrite rule to serve N-Triples
+RewriteCond %{HTTP_ACCEPT} application/n-triples
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.nt [R=303,L]
+
+# Rewrite rule to serve N-Quads
+RewriteCond %{HTTP_ACCEPT} application/n-quads
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.nq [R=303,L]
+
+# Rewrite rule to serve TTL
+RewriteCond %{HTTP_ACCEPT} text/turtle [OR]
+RewriteCond %{HTTP_ACCEPT} text/\* [OR]
+RewriteCond %{HTTP_ACCEPT} \*/turtle
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.ttl [R=303,L]
+
+# Default response
+# ---------------------------
+# default response is the documentation page
+RewriteRule ^$ https://traitecoevo.github.io/APD/ [R=303,L]

APD/release/.htaccess

@@ -0,0 +1,78 @@
+# Turn off MultiViews
+Options -MultiViews
+
+# Directive to ensure *.rdf files served as appropriate content type,
+# if not present in main apache config
+AddType application/rdf+xml .rdf
+AddType application/rdf+xml .owl
+AddType text/turtle .ttl
+AddType application/n-triples .nt
+AddType application/n-quads .nq
+AddType application/ld+json .json
+AddType application/ld+json .jsonld
+
+RewriteEngine on
+
+############################## Rules for Previous Versions ##############################
+
+# Rewrite rule to serve HTML
+RewriteCond %{HTTP_ACCEPT} !application/rdf\+xml.*(text/html|application/xhtml\+xml)
+RewriteCond %{HTTP_ACCEPT} text/html [OR]
+RewriteCond %{HTTP_ACCEPT} application/xhtml\+xml [OR]
+RewriteCond %{HTTP_USER_AGENT} ^Mozilla/.*
+RewriteCond %{REQUEST_URI} /release/(\d+)\.(\d+)\.(\d+)
+RewriteRule ^ https://traitecoevo.github.io/APD/release/%1.%2.%3/index.html [R=303,L]
+
+# Rewrite rule to serve JSON-LD
+RewriteCond %{HTTP_ACCEPT} application/ld\+json
+RewriteCond %{REQUEST_URI} /release/(\d+)\.(\d+)\.(\d+)
+RewriteRule ^ https://traitecoevo.github.io/APD/release/%1.%2.%3/APD.json [R=303,L]
+
+# Rewrite rule to serve N-Triples content
+RewriteCond %{HTTP_ACCEPT} application/n-triples
+RewriteCond %{REQUEST_URI} /release/(\d+)\.(\d+)\.(\d+)
+RewriteRule ^ https://traitecoevo.github.io/APD/release/%1.%2.%3/APD.nt [R=303,L]
+
+# Rewrite rule to serve N-Quads
+RewriteCond %{HTTP_ACCEPT} application/n-quads
+RewriteCond %{REQUEST_URI} /release/(\d+)\.(\d+)\.(\d+)
+RewriteRule ^ https://traitecoevo.github.io/APD/release/%1.%2.%3/APD.nq [R=303,L]
+
+# Rewrite rule to serve TTL content
+RewriteCond %{HTTP_ACCEPT} text/turtle [OR]
+RewriteCond %{HTTP_ACCEPT} text/\* [OR]
+RewriteCond %{HTTP_ACCEPT} \*/turtle
+RewriteCond %{REQUEST_URI} /release/(\d+)\.(\d+)\.(\d+)
+RewriteRule ^ https://traitecoevo.github.io/APD/release/%1.%2.%3/APD.ttl [R=303,L]
+
+############################## Rules for Latest Versions ##############################
+
+# Rewrite rule to serve HTML
+RewriteCond %{HTTP_ACCEPT} !application/rdf\+xml.*(text/html|application/xhtml\+xml)
+RewriteCond %{HTTP_ACCEPT} text/html [OR]
+RewriteCond %{HTTP_ACCEPT} application/xhtml\+xml [OR]
+RewriteCond %{HTTP_USER_AGENT} ^Mozilla/.*
+RewriteRule ^$ https://traitecoevo.github.io/APD/index.html [R=303,L]
+
+# Rewrite rule to serve JSON-LD
+RewriteCond %{HTTP_ACCEPT} application/ld\+json
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.json [R=303,L]
+
+# Rewrite rule to serve N-Triples content
+RewriteCond %{HTTP_ACCEPT} application/n-triples
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.nt [R=303,L]
+
+# Rewrite rule to serve N-Quads content
+RewriteCond %{HTTP_ACCEPT} application/n-quads
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.nq [R=303,L]
+
+# Rewrite rule to serve TTL content
+RewriteCond %{HTTP_ACCEPT} text/turtle [OR]
+RewriteCond %{HTTP_ACCEPT} text/\* [OR]
+RewriteCond %{HTTP_ACCEPT} \*/turtle
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.ttl [R=303,L]
+
+# Default responses
+# ---------------------------
+# default response is back to the root(s)
+ErrorDocument 404 https://w3id.org/APD/

APD/traits/.htaccess

@@ -0,0 +1,46 @@
+# Turn off MultiViews
+Options -MultiViews
+
+# Directive to ensure *.rdf files served as appropriate content type,
+# if not present in main apache config
+AddType application/rdf+xml .rdf
+AddType application/rdf+xml .owl
+AddType text/turtle .ttl
+AddType application/n-triples .nt
+AddType application/n-quads .nq
+AddType application/ld+json .json
+AddType application/ld+json .jsonld
+
+RewriteEngine on
+
+# Rewrite rule to serve HTML
+RewriteCond %{HTTP_ACCEPT} !application/rdf\+xml.*(text/html|application/xhtml\+xml)
+RewriteCond %{HTTP_ACCEPT} text/html [OR]
+RewriteCond %{HTTP_ACCEPT} application/xhtml\+xml [OR]
+RewriteCond %{HTTP_USER_AGENT} ^Mozilla/.*
+RewriteRule ^(.+)$ https://traitecoevo.github.io/APD/#$1 [R=303,L,NE]
+
+# Omitting the [NE] in above will result in the # being converted to its hexcode equivalent, %23, which will then result in a 404 Not Found error condition.
+
+# Rewrite rule to serve JSON-LD
+RewriteCond %{HTTP_ACCEPT} application/ld\+json
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.json [R=303,L]
+
+# Rewrite rule to serve N-Triples
+RewriteCond %{HTTP_ACCEPT} application/n-triples
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.nt [R=303,L]
+
+# Rewrite rule to serve N-Quads
+RewriteCond %{HTTP_ACCEPT} application/n-quads
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.nq [R=303,L]
+
+# Rewrite rule to serve TTL
+RewriteCond %{HTTP_ACCEPT} text/turtle [OR]
+RewriteCond %{HTTP_ACCEPT} text/\* [OR]
+RewriteCond %{HTTP_ACCEPT} \*/turtle
+RewriteRule ^$ https://traitecoevo.github.io/APD/APD.ttl [R=303,L]
+
+# Default response
+# ---------------------------
+# default response is the documentation page
+RewriteRule ^$ https://traitecoevo.github.io/APD/ [R=303,L]

BIGOWL4DQ/.htaccess

@@ -25,7 +25,7 @@ RewriteCond %{HTTP_ACCEPT} !application/rdf\+xml.*(text/html|application/xhtml\+
 RewriteCond %{HTTP_ACCEPT} text/html [OR]
 RewriteCond %{HTTP_ACCEPT} application/xhtml\+xml [OR]
 RewriteCond %{HTTP_USER_AGENT} ^Mozilla/.*
-RewriteRule ^(.+) https://proyectoaether.github.io/BIGOWL/index.html#$1 [R=303,NE]
+RewriteRule ^(.+) https://proyectoaether.github.io/BIGOWL4DQ/index.html#$1 [R=303,NE]
 
 RewriteCond %{HTTP_ACCEPT} application/rdf\+xml
 RewriteRule ^(.+) https://raw.githubusercontent.com/ProyectoAether/BIGOWL4DQ/main/bigowl4dq.owl [R=302,NE,L]