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1. panqc panqc Public

   A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses

   Python 16

2. Mtb-ISEMapper Mtb-ISEMapper Public

   An end-to-end Snakemake pipeline for analysis of IS6110 transposon insertions in the M. tuberculosis genome

   Python 2

3. farhat-lab/mtb-illumina-wgs-evaluation farhat-lab/mtb-illumina-wgs-evaluation Public

   Repository for analysis of Benchmarking the accuracy of short-read sequencing across the M. tuberculosis genome, 2022, Bioinformatics.

   Jupyter Notebook 6

4. pupmapper pupmapper Public

   A tool for calculation of pileup mappability for any genome of interest.

   Python 6