added note about score definition

mbuttner · Jan 21, 2019 · 8cef7da · 8cef7da
1 parent 3255a39
commit 8cef7da
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/scanpy/tools/_rank_genes_groups.py b/scanpy/tools/_rank_genes_groups.py
@@ -71,8 +71,9 @@ def rank_genes_groups(
         Structured array to be indexed by group id storing the gene
         names. Ordered according to scores.
     scores : structured `np.ndarray` (`.uns['rank_genes_groups']`)
-        Structured array to be indexed by group id storing the score for each
-        gene for each group. Ordered according to scores.
+        Structured array to be indexed by group id storing the z-score
+        underlying the computation of a p-value for each gene for each
+        group. Ordered according to scores.
     logfoldchanges : structured `np.ndarray` (`.uns['rank_genes_groups']`)
         Structured array to be indexed by group id storing the log2
         fold change for each gene for each group. Ordered according to