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Commits on Jan 23, 2019

• Set lower bound on pytest version

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• Improved error message for genome ambiguity in legacy 10x h5 files

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• Added test for error when reading legacy 10x h5 files

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Commits on Jan 22, 2019

• Don't leave file open

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• No longer require genome field for read_10x_h5

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Commits on Jan 15, 2019

• Added test for scatter plots with gene_symbols

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• Added gene_symbols option to scatter plots

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• Remove redundant code

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Commits on Jan 14, 2019

• Bugfix for percent_top argument of calculate_qc_metrics

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• Further doc updates

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• Stability updates to calculate_qc_metrics

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• Expand docs for calculate_qc_metrics

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• Added check on bounds for cumulative proportion calculation

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• Fix calculate_qc_metrics errors on no percent_top

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Commits on Nov 12, 2018

• Rename control_vars to qc_vars

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• Renamed metrics and fixed support for dense data

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• Fix clustermap for sparse X

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Commits on Nov 6, 2018

• Reduce memory usage of calculate_qc_metrics

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Commits on Nov 2, 2018

• Added flag for subsampling with or without replacement

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Commits on Nov 1, 2018

• Get downsampling to work

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Commits on Oct 30, 2018

• Bugfixes

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• Update docs for calculate_qc_metrics

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Commits on Oct 29, 2018

• Move calculate_qc_metrics out of simple.py

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• Added docs for qc_metrics

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• Removed f-strings.

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• Cleanup

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• qc_metrics COO support and features.

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• Allow more sparse matrix formats for qc_metrics

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• Bump numba version and travis setup

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• Add function calculate_qc_metrics

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Commits on Oct 26, 2018

• Speed up test collection

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Commits on Sep 13, 2018

• Fixed error in partition_kwargs

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• Generalized passing of arugments to louvain clustering

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• Added ability to choose partition type for louvain

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• Updated docs for louvain

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