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updated BIOCRO start.runs and write.config functions; complete workfl…
…ow runs, still need to test that it gives useful (valid) output
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,145 @@ | ||
| <?xml version="1.0"?> | ||
| <pecan> | ||
| <outdir>/tmp/out/run/</outdir> | ||
| <rundir>/tmp/out/run/</rundir> | ||
| <pfts> | ||
| <pft> | ||
| <name>biocro.saof</name> | ||
| <outdir>/tmp/out/saof/</outdir> | ||
| <constants> | ||
| <canopyParms> | ||
| <Sp>1.7</Sp> | ||
| <SpD> 0.0 </SpD> | ||
| <nlayers> 0.0 </nlayers> | ||
| <kd> 0.0 </kd> | ||
| <chi.l> 0.0 </chi.l> | ||
| <mResp1> 0.0 </mResp1> | ||
| <mResp2> 0.0 </mResp2> | ||
| <heightfactor> 0.0 </heightfactor> | ||
| </canopyParms> | ||
| <nitroParms> | ||
| <iLeafN>2.0</iLeafN> | ||
| <kLN>0.5</kLN> | ||
| <Vmax.b1>0.0</Vmax.b1> | ||
| <alpha.b1>0.0</alpha.b1> | ||
| <kpLN>0.2</kpLN> | ||
| <lnb0>-5</lnb0> | ||
| <lnb1>18</lnb1> | ||
| <lnFun>0</lnFun> | ||
| </nitroParms> | ||
| <photoParms> | ||
| <vmax> 0.0 </vmax> | ||
| <alpha> 0.0 </alpha> | ||
| <kparm> 0.0 </kparm> | ||
| <theta> 0.0 </theta> | ||
| <beta> 0.0 </beta> | ||
| <Rd> 0.0 </Rd> | ||
| <Catm> 0.0 </Catm> | ||
| <b0> 0.0 </b0> | ||
| <b1> 0.0 </b1> | ||
| <ws> 0.0 </ws> | ||
| </photoParms> | ||
| <soilParms> | ||
| <FieldC> -1.0 </FieldC> | ||
| <WiltP> -1.0 </WiltP> | ||
| <phi1> 0.01 </phi1> | ||
| <phi2> 10 </phi2> | ||
| <soilDepth> 1.0 </soilDepth> | ||
| <iWatCont> 0.0 </iWatCont> | ||
| <soilType> 6 </soilType> | ||
| <soilLayers> 1 </soilLayers> | ||
| <soilDepth> 5.0 </soilDepth> | ||
| <hydrDist> 0.0 </hydrDist> | ||
| <wsFun> 0 </wsFun> | ||
| <scsf> 1.0 </scsf> | ||
| <transResp> 5000000 </transResp> | ||
| <leafPotTh> -800 </leafPotTh> | ||
| <rfl> 0.2 </rfl> | ||
| <rsec> 0.2 </rsec> | ||
| <rsdf> 0.44 </rsdf> | ||
| </soilParms> | ||
| <seneParms> | ||
| <senleaf> 3000 </senleaf> | ||
| <senstem> 3500 </senstem> | ||
| <senRoot> 4000 </senRoot> | ||
| </seneParms> | ||
| <phenoParms> | ||
| <tp1> 562 </tp1> | ||
| <tp2> 1312 </tp2> | ||
| <tp3> 2063</tp3> | ||
| <tp4> 2676</tp4> | ||
| <tp5> 3211</tp5> | ||
| <tp6> 7000</tp6> | ||
| <kLeaf1> 0.33 </kLeaf1> | ||
| <kStem1> 0.37 </kStem1> | ||
| <kRoot1> 0.3 </kRoot1> | ||
| <kRhizome1> -0.008 </kRhizome1> | ||
| <kLeaf2> 0.14 </kLeaf2> | ||
| <kStem2> 0.85 </kStem2> | ||
| <kRoot2> 0.01 </kRoot2> | ||
| <kRhizome2> -0.0005 </kRhizome2> | ||
| <kLeaf3> 0.01</kLeaf3> | ||
| <kStem3> 0.63 </kStem3> | ||
| <kRoot3> 0.01</kRoot3> | ||
| <kRhizome3> 0.35 </kRhizome3> | ||
| <kLeaf4> 0.01 </kLeaf4> | ||
| <kStem4> 0.63 </kStem4> | ||
| <kRoot4> 0.01</kRoot4> | ||
| <kRhizome4>0.35 </kRhizome4> | ||
| <kLeaf5> 0.01 </kLeaf5> | ||
| <kStem5> 0.63 </kStem5> | ||
| <kRoot5> 0.01</kRoot5> | ||
| <kRhizome5> 0.35</kRhizome5> | ||
| <kLeaf6> 0.01 </kLeaf6> | ||
| <kStem6> 0.63 </kStem6> | ||
| <kRoot6> 0.01 </kRoot6> | ||
| <kRhizome6> 0.35</kRhizome6> | ||
| </phenoParms> | ||
| </constants> | ||
| </pft> | ||
| </pfts> | ||
| <database> | ||
| <userid>bety</userid> | ||
| <passwd>bety</passwd> | ||
| <name>bety</name> | ||
| <location>localhost</location> | ||
| </database> | ||
| <meta.analysis> | ||
| <iter>3000</iter> | ||
| <random.effects>FALSE</random.effects> | ||
| </meta.analysis> | ||
| <ensemble> | ||
| <size>2</size> | ||
| </ensemble> | ||
| <sensitivity.analysis> | ||
| <quantiles> | ||
| <sigma>0</sigma> | ||
| <!-- <sigma>1</sigma> | ||
| <sigma>-1</sigma>--> | ||
| </quantiles> | ||
| <variable>Stem</variable> | ||
| <start.year>2004</start.year> | ||
| <end.year>2004</end.year> | ||
| </sensitivity.analysis> | ||
| <model> | ||
| <name>BIOCRO</name> | ||
| <id></id> | ||
| </model> | ||
| <run> | ||
| <site> | ||
| <id>288</id> | ||
| <name>Sapelo Island</name> | ||
| <lat>31.40</lat> | ||
| <lon>-81.37</lon> | ||
| <met>NULL</met> | ||
| </site> | ||
| <folder>/tmp/out/run/</folder> | ||
| <start.date>2004-01-01 06:00:00</start.date> | ||
| <end.date>2005-12-31 05:59:00</end.date> | ||
| <host> | ||
| <name>localhost</name> | ||
| <rundir>/tmp/out/run/</rundir> | ||
| <outdir>/tmp/out/run/</outdir> | ||
| </host> | ||
| </run> | ||
| </pecan> |
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