mchowdh200
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vector-integration-simulation-pipeline Public
Forked from aehrc/vector-integration-simulation-pipelineA pipeline for simulating viral or vector integration into a host genome
Python UpdatedMar 12, 2024 -
tuning_playbook Public
Forked from google-research/tuning_playbookA playbook for systematically maximizing the performance of deep learning models.
Other UpdatedJan 17, 2024 -
stix-pcawg-pipeline Public
stix index pipeline using pcawg data on AWS cloud
Shell UpdatedJan 15, 2024 -
giggle_test Public
test singularity container for running giggle in a fixed environment
UpdatedDec 7, 2023 -
ssec2 Public
Forked from ryanlayer/ssec2Stupid Simple Elastic Compute Cloud
Shell UpdatedMay 30, 2023 -
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arxiv-style Public
Forked from kourgeorge/arxiv-styleA Latex style and template for paper preprints (based on NIPS style)
TeX MIT License UpdatedJul 2, 2022 -
stix Public
Forked from ryanlayer/stixStructural Variant Index
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local-attention-flax Public
Forked from lucidrains/local-attention-flaxLocal Attention - Flax module for Jax
Python MIT License UpdatedMay 26, 2021 -
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svtyper Public
Forked from hall-lab/svtyperBayesian genotyper for structural variants
Python MIT License UpdatedMar 6, 2021 -
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SV2 Public
Forked from dantaki/SV2Support Vector Structural Variation Genotyper
Python UpdatedApr 21, 2020 -
samplot Public
Forked from ryanlayer/samplotPlot structural variant signals from many BAMs and CRAMs