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  • bio Public

    general purpose bio-repository

    Jupyter Notebook MIT License Updated Jan 26, 2025

  • BarcodeDenoiser Public

    Statistical denoising of barcode data

    Jupyter Notebook MIT License Updated Jan 26, 2025

  • mchu.github.io Public template

    my website

    MIT License Updated Jan 12, 2025

  • tree-builder Public

    Reconstruct clonal lineage trees from sequential DNA barcodes.

    Python 1 MIT License Updated Nov 12, 2023

  • barcode-simulator Public

    Simulate evolving DNA barcodes in clonal populations.

    Python MIT License Updated Oct 24, 2023

  • DNA-evolver Public

    Evolutionary algorithm for finding pairs of non-homologous DNA strings.

    Python MIT License Updated Oct 2, 2023

  • barcode-matrix Public

    Python MIT License Updated Aug 10, 2023

  • RPT Public

    Reverse promoter trapping (RPT) for isolation of PASTE recombinants.

    Python Updated Nov 15, 2022