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Develop #6

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2e905d0
added diagnositic code sets and class restrictions pertinent to diagn…
Jun 25, 2019
fa05e6e
MIREOT'd PATO's 'alive' and 'dead' classes.
dillerm Jun 26, 2019
84c702c
changed intance IRIs from PCORnet/PCORnet_######## to PCORowl_#######…
Jul 1, 2019
ae3e5e8
moved classes related to questions and answer sets to OMRSE
Jul 1, 2019
c75a6f2
Merge branch 'master' into develop
aellenhicks Jul 2, 2019
51566ff
Created classes for PCORnet discharge status, skilled nursing facilit…
Jul 2, 2019
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moved classes related to questions and answer sets to OMRSE
  • Loading branch information
Hicks authored and Hicks committed Jul 1, 2019
commit ae3e5e8078f6fc6b0ef2edf7e97fb44c4579c7bb
223 changes: 2 additions & 221 deletions PCORnetCDM.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -7492,12 +7492,6 @@ Environmental exposures include those imposed by natural environments, experimen
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000001"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>


Expand Down Expand Up @@ -7687,22 +7681,13 @@ Environmental exposures include those imposed by natural environments, experimen

<!-- http://purl.obolibrary.org/obo/OMRSE_00000132 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000132">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCORnet_00000007"/>
</owl:Class>
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000132"/>



<!-- http://purl.obolibrary.org/obo/OMRSE_00000134 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000134">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCORnet_00000009"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OMRSE_00000134"/>



Expand Down Expand Up @@ -7825,87 +7810,6 @@ Environmental exposures include those imposed by natural environments, experimen



<!-- http://purl.obolibrary.org/obo/PCORnet_00000007 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet_00000007">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCORnet_00000008"/>
<rdfs:comment xml:lang="en">Fix iri</rdfs:comment>
<rdfs:label xml:lang="en">answer to ID question</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PCORnet_00000008 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet_00000008">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCORnet_00000011"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCORnet_00000009"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:comment xml:lang="en">Fix iri</rdfs:comment>
<rdfs:label xml:lang="en">response to an ID question asking process</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PCORnet_00000009 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet_00000009">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000001"/>
<rdfs:label xml:lang="en">ID question asking process</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PCORnet_00000010 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet_00000010">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCORnet_00000011"/>
<rdfs:comment xml:lang="en">FIX IRI</rdfs:comment>
<rdfs:label xml:lang="en">refusal to answer datum</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PCORnet_00000011 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet_00000011">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000056"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000001"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:comment xml:lang="en">Fix IRI</rdfs:comment>
<rdfs:label xml:lang="en">response to a question asking process</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PCORnet_00000013 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet_00000013">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCORnet_00000009"/>
<rdfs:comment xml:lang="en">Fix IRI</rdfs:comment>
<rdfs:label xml:lang="en">ethnic ID question asking process</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PCORnet_00000021 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet_00000021">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PCORnet_00000009"/>
<rdfs:comment xml:lang="en">FIX IRI</rdfs:comment>
<rdfs:label xml:lang="en">race ID question asking process</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PCORnet_00000037 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet_00000037">
Expand Down Expand Up @@ -8171,38 +8075,11 @@ Environmental exposures include those imposed by natural environments, experimen
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000010"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000012"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:label xml:lang="en">PROMIS response data item</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000001 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0021003"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000008"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:label xml:lang="en">question asking process</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000002 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000002">
Expand All @@ -8229,30 +8106,6 @@ Environmental exposures include those imposed by natural environments, experimen



<!-- http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000004 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:label xml:lang="en">question text</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000005 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002351"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000012"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:label xml:lang="en">answer set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000006 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000006">
Expand All @@ -8273,47 +8126,6 @@ Environmental exposures include those imposed by natural environments, experimen



<!-- http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000008 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000008">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000020"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000004"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000020"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000059"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000005"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:label xml:lang="en">material information bearer of question text plus answer set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000009 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000009">
Expand Down Expand Up @@ -8343,38 +8155,11 @@ Environmental exposures include those imposed by natural environments, experimen

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000011">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000004"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000005"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:label xml:lang="en">PCORnet item</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000012 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000012">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002350"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000005"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:label xml:lang="en">option as memeber of answer set</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000013 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PCORnet/PCORnet_00000013">
Expand Down Expand Up @@ -8843,7 +8628,6 @@ excludes emergency department encounters</PCORnet_00000046>
<!-- http://purl.obolibrary.org/obo/PCORowl_00000012 -->

<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/PCORowl_00000012">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCORnet_00000010"/>
<obo:RO_0000056 rdf:resource="http://purl.obolibrary.org/obo/PCORowl_00000014"/>
<obo:IAO_0000136 rdf:resource="http://purl.obolibrary.org/obo/PCORnet_00000015"/>
<rdfs:label xml:lang="en">rta1</rdfs:label>
Expand All @@ -8854,7 +8638,6 @@ excludes emergency department encounters</PCORnet_00000046>
<!-- http://purl.obolibrary.org/obo/PCORowl_00000014 -->

<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/PCORowl_00000014">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCORnet_00000013"/>
<rdfs:label xml:lang="en">eiqap1</rdfs:label>
</owl:NamedIndividual>

Expand Down Expand Up @@ -8921,7 +8704,6 @@ excludes emergency department encounters</PCORnet_00000046>
<!-- http://purl.obolibrary.org/obo/PCORowl_00000022 -->

<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/PCORowl_00000022">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCORnet_00000021"/>
<rdfs:label xml:lang="en">ridqap1</rdfs:label>
</owl:NamedIndividual>

Expand Down Expand Up @@ -8949,7 +8731,6 @@ excludes emergency department encounters</PCORnet_00000046>
<!-- http://purl.obolibrary.org/obo/PCORowl_00000025 -->

<owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/PCORowl_00000025">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/PCORnet_00000010"/>
<obo:RO_0000056 rdf:resource="http://purl.obolibrary.org/obo/PCORowl_00000022"/>
<obo:IAO_0000136 rdf:resource="http://purl.obolibrary.org/obo/PCORnet_00000024"/>
<rdfs:label xml:lang="en">rta2</rdfs:label>
Expand Down