7 Pull requests merged by 3 people

• Anvi inspect snvs issue

  #2401 merged Feb 25, 2025

• Fix the collapse of bins in the interface is unstable and often breaks #2042

  #2399 merged Feb 20, 2025

• Update buildLegendTables to pass states to legend

  #2397 merged Feb 18, 2025

• Update legend color sync

  #2396 merged Feb 18, 2025

• Exclude '--' rxns from module completeness/copy num estimates with the --exclude-dashed-reactions parameter

  #2395 merged Feb 4, 2025

• Report all completion and redundancy estimate

  #2394 merged Jan 31, 2025

• Fix deletion reporting in variability table

  #2392 merged Jan 29, 2025

6 Issues closed by 5 people

• [BUG] Kaiju parser is broken in by get_TAB_delimited_file_as_dictionary

  #2398 closed Feb 21, 2025

• [BUG] Cannot install Anvio

  #2400 closed Feb 21, 2025

• [BUG] The collapse of bins in the interface is unstable and often breaks

  #2042 closed Feb 20, 2025

• [BUG] Colors in the legend not matching the figure

  #2367 closed Feb 18, 2025

• [BUG] anvi-estimate-metabolism fails: KeyError and erroneous module stepwise completeness evaluation?

  #2393 closed Jan 30, 2025

• [BUG] anvi-profile does not report all deletion events

  #2390 closed Jan 29, 2025

3 Issues opened by 3 people

• [FEATURE REQUEST] Allow nucleotide sequences and other custom params with FastTree in anvi-gen-phylogenomic-tree

  #2402 opened Feb 25, 2025

• [BUG] `anvi-inspect` does not show splits without genes

  #2391 opened Jan 28, 2025

• [BUG] Summarize bin collection selected from anvio interface keeps summarizing all clusters. (leave the '[BUG]' part)

  #2389 opened Jan 26, 2025

3 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• prodigal to pyrodigal

  #2306 commented on Jan 29, 2025 • 0 new comments

• Pangraph 0.3.0

  #2357 commented on Feb 25, 2025 • 0 new comments

• Foldseek driver + Structure base Pangenome

  #2364 commented on Feb 3, 2025 • 0 new comments