other python3 fixes

merenlab · Jan 16, 2020 · 4d95d02 · 4d95d02
1 parent 783f296
commit 4d95d02
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/Oligotyping/utils/blast.py b/Oligotyping/utils/blast.py
@@ -222,7 +222,7 @@ def get_results_dict(self, mismatches = None, gaps = None, min_identity = None,
         b6 = b6lib.B6Source(self.output)
 
         ids_with_hits = set()
-        while next(b6):
+        while b6.next():
             if b6.entry.query_id == b6.entry.subject_id:
                 continue
 

diff --git a/Oligotyping/utils/html/for_decomposition.py b/Oligotyping/utils/html/for_decomposition.py
@@ -19,7 +19,7 @@
 from Oligotyping.utils.utils import pretty_print
 from Oligotyping.utils.utils import get_samples_dict_from_environment_file
 from Oligotyping.utils.random_colors import get_list_of_colors
-from .error import HTMLError
+from Oligotyping.utils.html.error import HTMLError
 
 
 try:
@@ -253,7 +253,7 @@ def get_figures_dict(html_dict_prefix):
     index_page = os.path.join(html_output_directory, 'index.html')
     rendered = render_to_string('index_for_decomposition.tmpl', html_dict)
 
-    open(index_page, 'w').write(rendered.encode("utf-8"))
+    open(index_page, 'wb').write(rendered.encode("utf-8"))
 
     return index_page
 

diff --git a/Oligotyping/utils/html/for_oligotyping.py b/Oligotyping/utils/html/for_oligotyping.py
@@ -21,7 +21,7 @@
 from Oligotyping.utils.utils import pretty_print
 from Oligotyping.utils.utils import get_samples_dict_from_environment_file
 from Oligotyping.utils.random_colors import get_list_of_colors
-from .error import HTMLError
+from Oligotyping.utils.html.error import HTMLError
 
 
 try: