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meren committed Jul 4, 2017
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2 changes: 1 addition & 1 deletion Unittests/files/run_decompose
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#!/bin/bash

decompose clone43-v6v4.fa -M 1 -m 0.2 --number-of-discriminants 3 --output `pwd`/test-decomposition-output -F --gen-html --skip-check-input
decompose clone43-v6v4.fa -M 1 -m 0.2 --number-of-discriminants 3 --output `pwd`/test-decomposition-output -F --skip-check-input
python ../../Oligotyping/visualization/decomposition_topology.py test-decomposition-output/TOPOLOGY.cPickle
python ../../Oligotyping/visualization/oligotype_distribution_stack_bar.py test-decomposition-output/ENVIRONMENT.txt
#rm -rf test-decomposition-output

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