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  • Sea State Inc., Scaleability LLC
  • Seattle, WA

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Achievement: Arctic Code Vault ContributorAchievement: Pull Shark

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  • datamoderate Public

    Stock assessment for catch and length data

    Scheme 1 MIT License Updated Jul 27, 2020

  • VAST_SN Public

    Demonstration of using VAST for stream network models

    C++ Updated Jul 7, 2020

  • ss3sim Public

    Forked from ss3sim/ss3sim

    An R package for stock-assessment simulation with Stock Synthesis

    R 1 Other Updated Jul 6, 2020

  • LIME Public

    Length-based integrated mixed effects model

    R 12 15 MIT License Updated Jun 18, 2020

  • FishStatsUtils Public

    Forked from James-Thorson-NOAA/FishStatsUtils

    Shared resources for spatio-temporal models

    R GNU General Public License v3.0 Updated Jun 2, 2020

  • VASTPlotUtils Public

    Plotting utilities to use with VAST

    R 1 1 MIT License Updated Feb 27, 2020

  • OR_coho Public

    Spatiotemporal models of Oregon coastal coho salmon densities

    C++ MIT License Updated Feb 11, 2020

  • SSS Public

    Forked from shcaba/SSS

    Simple Stock Synthesis code and examples

    R 1 Updated Jan 10, 2020

  • stream_network_NZ Public

    Spatiotemporal stream network models for New Zealand freshwater fish

    R 1 1 MIT License Updated Dec 5, 2019

  • bioensembles Public

    Stacking algorithm for integrating uncertainty in life history parameter values for length-based, data-limited fisheries stock assessment

    R 1 Updated Aug 19, 2019

  • stream_networks Public

    Using VAST to model population density along stream networks

    C++ 1 2 MIT License Updated Jul 31, 2019

  • VAST Public

    Forked from James-Thorson-NOAA/VAST

    Spatio-temporal analysis of univariate or multivariate data, e.g., standardizing data for multiple species or stages

    C++ GNU General Public License v3.0 Updated Apr 24, 2019

  • StreamUtils Public

    R package to supplement FishStatsUtils to run stream networks as a spatial model in VAST

    R MIT License Updated Mar 8, 2019

  • sraplus Public

    Forked from DanOvando/sraplus
    R MIT License Updated Jan 19, 2019

  • RuddR Public

    R functions that I use frequently

    R MIT License Updated Jan 11, 2019

  • razor_clam_pop Public

    Population modeling of razor clams to explore impacts to the social-ecological system with future threats.

    R Updated Dec 11, 2018

  • simple_fishery_demo Public

    Demonstrating the relationship between maturity, selectivity, length composition of the catch, and abundance-at-age for teaching purposes.

    R 2 Updated Aug 28, 2018

  • LIME_shiny Public

    Shiny app for running LIME assessment method

    R 1 1 Updated Aug 22, 2018

  • LIME_application Public

    Example application of the length-based integrated mixed-effects model. See LIME repo for R package.

    R 1 Updated Jun 25, 2018

  • ADMB_course Public

    ADMB course taught at the Alaska Department of Fish and Game, March 13-16, 2018

    Smarty 1 3 Updated Mar 19, 2018

  • LBSPR Public

    Forked from AdrianHordyk/LBSPR

    Length Based Spawning Potential Ratio R Package

    R Updated Jan 24, 2018

  • status_priors Public

    Using RAM Legacy data and life history to develop priors on stock status for unassessed stocks

    R Updated Jan 14, 2018

  • caribbean_assessments Public

    Length-based stock assessments in the Caribbean region

    Updated Jan 9, 2018

  • CatchMSY Public

    Forked from smartell/CatchMSY

    Integrated Catch MSY method for data poor stock assessment.

    HTML GNU General Public License v2.0 Updated Aug 15, 2017

  • LIME_sim Public

    Simulation study to test the length-based integrated mixed effects (LIME) method

    R Updated Aug 8, 2017

  • CatchMSY_test Public

    Self-testing and simulation-testing of integrated CatchMSY method

    R Updated Jul 11, 2017

  • gulf_sturgeon_telemetry Public

    Updated code for Multi-state mark-recapture model to estimate mortality and movement rates of Gulf sturgeon.

    R 1 Updated Mar 14, 2017

  • fishing_recruitment_tradeoff Public

    Module demonstrating the confounding effects of fishing mortality and recruitment on the length distribution in a population.

    R 1 Updated Jan 10, 2017

  • LIME_demo Public

    R Updated Jan 10, 2017

  • AlaskaHerring Public

    Forked from seastateinc/AlaskaHerring

    Age-structured Assessment Model for Alaska Herring Stocks

    PostScript Updated Dec 17, 2016