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Commits on Jun 24, 2024

• Avoid unit test failures with newer sklearn

  mgalardini

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Commits on Nov 8, 2023

• Tests for new annotate_hits option

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  mgalardini

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Commits on May 8, 2023

• Handle changes in statsmodels behavior

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  mgalardini

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Commits on May 3, 2023

• Properly formatted output table w/o distances

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  mgalardini

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Commits on Mar 24, 2023

• Consider that a distance matrix may not be symmetrical

  mgalardini

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Commits on Mar 9, 2023

• Drop screen plot test

  johnlees

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• scree plot err not on local machine

  johnlees

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• eigvec may flip sign

  johnlees

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• Relax precision of some tests

  johnlees

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Commits on Nov 21, 2022

• Add test with covariates and enet_predict

  mgalardini

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Commits on Jun 8, 2022

• Sanitize full path inputs for gff2bed

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  mgalardini

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Commits on Jun 1, 2022

• DO not run WG with --output-patterns

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  mgalardini

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Commits on Mar 18, 2022

• Explicit kwargs for sklearn

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  mgalardini

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Commits on Jul 16, 2021

• Do not crash when saving wg model w/ covariates

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  mgalardini

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Commits on Jul 8, 2021

• Print the lineage header with whole genome

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  mgalardini

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Commits on Jun 25, 2021

• Fix enet LOSO; add test

  johnlees

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Commits on May 19, 2021

• Abort when --lmm but no similarity/cache provided

  mgalardini

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Commits on Apr 30, 2021

• Fix tests for variant pre-filtering changes

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  mgalardini

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• Change pre-filtering reporting

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  mgalardini

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Commits on Feb 15, 2021

• Add test that phenotype is numeric; move CI to github actions (#140)

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  johnlees

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Commits on May 13, 2020

• Properly handle missing variants from VCF files

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  mgalardini

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Commits on Mar 11, 2020

• Avoid crashes while filtering variants for enet (#116)

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  mgalardini

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Commits on Mar 9, 2020

• Fix LMM tests

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  mgalardini

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• Try to fix numeric sample names

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  johnlees

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Commits on Feb 11, 2020

• Check covariates samples matching with LMM

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  mgalardini

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Commits on Oct 23, 2019

• Merge branch 'master' into burden-dominant

  mgalardini

  authored
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• Bitwise OR for VCF + burden testing

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  mgalardini

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Commits on Oct 17, 2019

• Allow multiple intervals for burden tests

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  mgalardini

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Commits on Sep 11, 2019

• Calculate t-test for lmm + continuous

  johnlees

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Commits on Aug 16, 2019

• Fix tests for continuous p-values

  johnlees

  committed
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Commits on Aug 1, 2019

• Fix tests (compare_tests for enet)

  johnlees

  committed
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• Fix compare tests for enet

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  johnlees

  committed
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Commits on Jul 17, 2019

• Handle different versions of statsmodels

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  mgalardini

  committed
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Commits on Jul 7, 2019

• Fix enet tests

  johnlees

  committed
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Commits on Jun 14, 2019

• Fix tests for latest version of scipy

  mgalardini

  committed
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