added instruction to update pVocabularyDate

mgurley · Jun 24, 2016 · 6ecad35 · 6ecad35
1 parent 10499ba
commit 6ecad35
Show file tree

Hide file tree

Showing 19 changed files with 19 additions and 19 deletions.
diff --git a/CIEL/readme.md b/CIEL/readme.md
@@ -12,7 +12,7 @@ Prerequisites:
 1. Run create_source_tables.sql
 2. Unzip CIEL_CTL.zip
 3. Load *.ctl using SQL Loader
-4. Run load_stage.sql
+4. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 5. Run generic_update.sql (from working directory)
 
 
diff --git a/CPT4/readme.md b/CPT4/readme.md
@@ -5,7 +5,7 @@ Prerequisites:
 - Schema UMLS
 - Working directory CPT4
 
-1. Run load_stage.sql
+1. Run load_stage.sql (with updated pVocabularyDate = latest update of UMLS)
 2. Run generic_update.sql (from working directory)
 
 
diff --git a/CVX/readme.md b/CVX/readme.md
@@ -9,7 +9,7 @@ Prerequisites:
 - Download Flat file http://www2a.cdc.gov/vaccines/IIS/IISStandards/downloads/cvx.txt and re-save in UTF-8 w/o BOM codepage
 3. Load cvx.txt into CVX using control file of the same name
 4. Load Vaccines administered (CVX) Value Set Updates from https://phinvads.cdc.gov/vads/ValueSetRssFeed.xml?oid=2.16.840.1.114222.4.11.934. Download all versions, except 4. Use cvx_vXXX control files.
-5. Run load_stage.sql
+5. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 6. Run generic_update.sql (from working directory)
 
 
diff --git a/DRG/readme.md b/DRG/readme.md
@@ -14,7 +14,7 @@ Prerequisites:
 
 3. Extract *.txt files from archives
 4. Rename them to FY2011.txt, FY2012.txt ... FY2015.txt and sequentially load using control files of the same names
-5. Run load_stage.sql
+5. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 6. generic_update NOT needed
 
 
diff --git a/ETC/readme.md b/ETC/readme.md
@@ -8,5 +8,5 @@ Prerequisites:
 1. Run create_source_tables.sql
 2. Unpack "ETC sources.zip"
 3. Load all TXT files using control files of the same name
-4. Run load_stage.sql
+4. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 5. Run generic_update.sql (from working directory)
diff --git a/HCPCS/readme.md b/HCPCS/readme.md
@@ -10,7 +10,7 @@ Prerequisites:
 3. Exctract HCPCYYYY_CONTR_ANWEB.xlsx
 4. Open file and resave to ANWEB_V2.csv
 5. Load them into ANWEB_V2. Use the control files of the same name.
-6. Run load_stage.sql
+6. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 7. Run generic_update.sql (from working directory)
 
 
diff --git a/ICD10/readme.md b/ICD10/readme.md
@@ -5,7 +5,7 @@ Prerequisites:
 - Schema UMLS
 - Working directory ICD10.
 
-1. Run load_stage.sql
+1. Run load_stage.sql (with updated pVocabularyDate = latest update date)
 2. Run generic_update.sql (from working directory)
 
 
diff --git a/ICD10CM/readme.md b/ICD10CM/readme.md
@@ -9,7 +9,7 @@ Prerequisites:
 2. Download ftp://ftp.cdc.gov/pub/Health_Statistics/NCHS/Publications/ICD10CM/20xx/ICD10CM_FY20xx_code_descriptions.zip
 3. Extract icd10cm_order_20xx.txt and rename to icd10cm.txt
 4. Load into icd10cm_table with icd10cm.ctl
-5. Run load_stage.sql
+5. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 6. Run generic_update.sql (from working directory)
 
 
diff --git a/ICD10PCS/readme.md b/ICD10PCS/readme.md
@@ -9,7 +9,7 @@ Prerequisites:
 3. Exctract icd10pcs_codes_YYYY.txt and rename to icd10pcs.txt
 4. Load file into ICD10PCS. Use the control files of the same name.
 5. Change pVocabularyDate according file creation date
-6. Run load_stage.sql
+6. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 7. Run generic_update.sql (from working directory)
 
 
diff --git a/ICD9CM/readme.md b/ICD9CM/readme.md
@@ -9,7 +9,7 @@ Prerequisites:
 2. Download from ICD-9-CM-vXX-master-descriptions.zip from http://www.cms.gov/Medicare/Coding/ICD9ProviderDiagnosticCodes/codes.html
 3. Extract CMSXX_DESC_LONG_DX.txt and CMSXX_DESC_SHORT_DX.txt
 4. Load them into CMS_DESC_LONG_DX and CMS_DESC_SHORT_DX. Use the control files of the same name.
-5. Run load_stage.sql
+5. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 6. Run generic_update.sql (from working directory)
 
 
diff --git a/ICD9Proc/readme.md b/ICD9Proc/readme.md
@@ -9,7 +9,7 @@ Prerequisites:
 2. Download from ICD-9-CM-vXX-master-descriptions.zip from http://www.cms.gov/Medicare/Coding/ICD9ProviderDiagnosticCodes/codes.html
 3. Extract CMSXX_DESC_LONG_SG.txt and CMSXX_DESC_SHORT_SG.txt
 4. Load them into CMS_DESC_LONG_SG and CMS_DESC_SHORT_SG. Use the control files of the same name.
-5. Run load_stage.sql
+5. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 6. Run generic_update.sql (from working directory)
 
 
diff --git a/LOINC/readme.md b/LOINC/readme.md
@@ -18,7 +18,7 @@ worksheet "FORMS" to table LOINC_FORMS (clear columns after Loinc, save as Unico
 10. Load him into scccRefset_MapCorrOrFull_INT using xder2_scccRefset_LOINCMapCorrelationOriginFull_INT.ctl
 11. Download LNCxxx_TO_CPT2005_MAPPINGS.zip from http://www.nlm.nih.gov/research/umls/mapping_projects/loinc_to_cpt_map.html
 12. Extract MRSMAP.RRF and load into CPT_MRSMAP using CPT_MRSMAP.ctl
-13. Run load_stage.sql
+13. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 14. Run generic_update.sql (from working directory)
 
 
diff --git a/MeSH/readme.md b/MeSH/readme.md
@@ -5,7 +5,7 @@ Prerequisites:
 - Schema UMLS
 - Working directory MeSH.
 
-1. Run load_stage.sql
+1. Run load_stage.sql (with updated pVocabularyDate = latest update of UMLS)
 2. Run generic_update.sql (from working directory)
 
 
diff --git a/MedDRA/readme.md b/MedDRA/readme.md
@@ -18,7 +18,7 @@ pt.asc
 soc.asc
 soc_hlgt.asc
 
-4. Run load_stage.sql
+4. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 5. Run generic_update.sql (from working directory)
 
 
diff --git a/NDC_SPL/readme.md b/NDC_SPL/readme.md
@@ -19,5 +19,5 @@ Open the site http://www.fda.gov/Drugs/InformationOnDrugs/ucm142438.htm
 6. Extract LABELS using unzipxml.sh and load xml files using loadxml.ctl
 7. Extract rxnorm_mappings.zip and load rxnorm_mappings.txt using rxnorm_mappings.ctl
 8. Run parse_XML.sql
-9. Run load_stage.sql
+9. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 10. Run generic_update.sql (from working directory)
diff --git a/OPCS4/readme.md b/OPCS4/readme.md
@@ -10,5 +10,5 @@ Prerequisites:
 3. Extract the nhs_dmwb_xxxx.zip\UKTC NHS Data Migration Maps.mdb file.
 4. Open UKTC NHS Data Migration Maps.mdb in Microsoft Access and do the export OPCS and OPCSSCTMAP tables into txt format with default settings (but use UTF-8!)
 5. Load OPCS.txt and OPCSSCTMAP.txt into OPCS and OPCSSCTMAP using control files of the same name
-6. Run load_stage.sql
+6. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 7. Run generic_update.sql (from working directory)
diff --git a/Read/readme.md b/Read/readme.md
@@ -17,7 +17,7 @@ nhs_datamigration_VV.0.0_YYYYMMDD000001.zip from https://isd.hscic.gov.uk/trud3/
 
 4. Load Keyv2.all and rcsctmap2_uk.txt into KEYV2 and RCSCTMAP2_UK using control files of the same name
 
-5. Run load_stage.sql
+5. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 6. Run generic_update.sql (from working directory)
 
 
diff --git a/RxNorm/readme.md b/RxNorm/readme.md
@@ -13,7 +13,7 @@ RXNCONSO
 RXNREL
 RXNSAT
 
-4. Run load_stage.sql
+4. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 5. Run generic_update.sql (from working directory)
 
 
diff --git a/SNOMED/readme.md b/SNOMED/readme.md
@@ -37,7 +37,7 @@ Remove date from file name.
 15. Extract weekXXYYYY-rX_X-BNF.zip/f_bnf1_XXXXXXX.xml and rename him to dmdbonus.xml
 16. Load dmdbonus.xml using dmdbonus.ctl
 
-17. Run load_stage.sql
+17. Run load_stage.sql (with updated pVocabularyDate = latest update of vocabulary)
 18. Run generic_update.sql (from working directory)