A DSL for data-driven computational pipelines

WDL Analysis Research Pipelines

LIkelihood Ratio Interpretation of Clinical AbnormaLities

Workflow Description Language - Specification and Implementations

RNA-seq analysis pipeline for detection gene-fusions

Funnel is a toolkit for distributed task execution via a simple, standard API.

A Python library to manage day-to-day analysis of next generation sequencing (NGS) data by the Biomedical Sequencing Facility (BSF).

A Java web application calling Microsoft graph that is secured using the Microsoft identity platform

A node.js demo application

Sample Java application referred to by Azure Pipelines documentation

Melbourne Bioinformatics documentation in markdown format

HPO archive of the ontology and annotations

Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics

High-Performance NoSQL database and RESTful web services to access to most relevant biological data

This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

BioNetDB implements a storage engine to work with biological networks using a NoQSL Graph database

This repository implements the Protobuf and Avro schemas from GA4GH available at http://ga4gh.org/#/schemas

Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency

OpenCB common libs project

OpenClinica is the world's first commercial open source clinical trial software for Electronic Data Capture (EDC) Clinical Data Management (CDM).

Datastore library for querying RDBMS and NoSQL databases