GitHub - microsoft/bwa: Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

TODO: Create a file called LICENSE (not LICENSE.TXT, LICENSE.md, etc.)…

Name		Name	Last commit message	Last commit date
Latest commit History 928 Commits
bwakit		bwakit
.gitignore		.gitignore
.travis.yml		.travis.yml
COPYING		COPYING
ChangeLog		ChangeLog
Makefile		Makefile
NEWS.md		NEWS.md
QSufSort.c		QSufSort.c
QSufSort.h		QSufSort.h
README-alt.md		README-alt.md
README.md		README.md
SECURITY.md		SECURITY.md
bamlite.c		bamlite.c
bamlite.h		bamlite.h
bntseq.c		bntseq.c
bntseq.h		bntseq.h
bwa.1		bwa.1
bwa.c		bwa.c
bwa.h		bwa.h
bwamem.c		bwamem.c
bwamem.h		bwamem.h
bwamem_extra.c		bwamem_extra.c
bwamem_pair.c		bwamem_pair.c
bwape.c		bwape.c
bwase.c		bwase.c
bwase.h		bwase.h
bwaseqio.c		bwaseqio.c
bwashm.c		bwashm.c
bwt.c		bwt.c
bwt.h		bwt.h
bwt_gen.c		bwt_gen.c
bwt_lite.c		bwt_lite.c
bwt_lite.h		bwt_lite.h
bwtaln.c		bwtaln.c
bwtaln.h		bwtaln.h
bwtgap.c		bwtgap.c
bwtgap.h		bwtgap.h
bwtindex.c		bwtindex.c
bwtsw2.h		bwtsw2.h
bwtsw2_aux.c		bwtsw2_aux.c
bwtsw2_chain.c		bwtsw2_chain.c
bwtsw2_core.c		bwtsw2_core.c
bwtsw2_main.c		bwtsw2_main.c
bwtsw2_pair.c		bwtsw2_pair.c
example.c		example.c
fastmap.c		fastmap.c
is.c		is.c
kbtree.h		kbtree.h
khash.h		khash.h
kopen.c		kopen.c
kseq.h		kseq.h
ksort.h		ksort.h
kstring.c		kstring.c
kstring.h		kstring.h
ksw.c		ksw.c
ksw.h		ksw.h
kthread.c		kthread.c
kvec.h		kvec.h
main.c		main.c
malloc_wrap.c		malloc_wrap.c
malloc_wrap.h		malloc_wrap.h
maxk.c		maxk.c
pemerge.c		pemerge.c
qualfa2fq.pl		qualfa2fq.pl
rle.c		rle.c
rle.h		rle.h
rope.c		rope.c
rope.h		rope.h
utils.c		utils.c
utils.h		utils.h
xa2multi.pl		xa2multi.pl

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