Skip to content

Commit

Permalink
recover yml
Browse files Browse the repository at this point in the history
  • Loading branch information
@CSU-KangHu
CSU-KangHu committed Sep 6, 2024
1 parent abe3d1a commit c0c31ba
Show file tree
Hide file tree
Showing 3 changed files with 324 additions and 324 deletions.
312 changes: 17 additions & 295 deletions environment.yml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -5,303 +5,25 @@ channels:
- defaults
- r
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- abseil-cpp=20210324.2=h9c3ff4c_0
- absl-py=0.15.0=pyhd8ed1ab_0
- aiohttp=3.9.1=py38h01eb140_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- alsa-lib=1.2.3.2=h166bdaf_0
- astunparse=1.6.3=pyhd8ed1ab_0
- async-timeout=4.0.3=pyhd8ed1ab_0
- attrs=23.2.0=pyh71513ae_0
- bedtools=2.30.0=h468198e_3
- binutils_impl_linux-64=2.40=hf600244_0
- binutils_linux-64=2.40=hdade7a5_3
- biopython=1.78=py38h7f8727e_0
- blast=2.15.0=pl5321h6f7f691_1
- blinker=1.7.0=pyhd8ed1ab_0
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- brotli-python=1.1.0=py38h17151c0_1
- bz2file=0.98=py_0
- bzip2=1.0.8=hd590300_5
- c-ares=1.25.0=hd590300_0
- ca-certificates=2024.7.2=h06a4308_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cachetools=5.3.2=pyhd8ed1ab_0
- cairo=1.16.0=h6cf1ce9_1008
- cd-hit=4.8.1=h43eeafb_9
- certifi=2024.7.4=py38h06a4308_0
- cffi=1.15.1=py38h74dc2b5_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- click=8.1.7=unix_pyh707e725_0
- containers-common=0.57.0=ha770c72_0
- contourpy=1.1.1=py38h7f3f72f_1
- cryptography=39.0.0=py38h1724139_0
- cuda-version=11.1=hdbd7af8_2
- cudatoolkit=11.1.1=hb139c0e_12
- cudnn=8.8.0.121=hcdd5f01_4
- curl=7.87.0=h6312ad2_0
- cycler=0.12.1=pyhd8ed1ab_0
- dbus=1.13.18=hb2f20db_0
- drmaa=0.7.9=py_1000
- entrez-direct=16.2=he881be0_1
- et_xmlfile=1.1.0=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_1
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.47.2=py38h01eb140_0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- frozenlist=1.4.1=py38h01eb140_0
- fuzzysearch=0.7.3=py38h17151c0_5
- gast=0.4.0=pyh9f0ad1d_0
- gawk=5.3.0=ha916aea_0
- gcc_impl_linux-64=13.2.0=h9eb54c0_7
- gcc_linux-64=13.2.0=h1ed452b_3
- genometools-genometools=1.6.1=py38h23571c4_2
- gettext=0.21.1=h27087fc_0
- ghc=8.10.7=h4a049f1_0
- giflib=5.2.1=h0b41bf4_3
- glib=2.68.2=h36276a3_0
- glib-tools=2.68.2=h9c3ff4c_0
- gmp=6.3.0=h59595ed_0
- google-auth=2.26.2=pyhca7485f_0
- google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
- google-pasta=0.2.0=pyh8c360ce_0
- gpgme=1.18.0=h27087fc_0
- graphite2=1.3.13=h58526e2_1001
- grpc-cpp=1.39.1=h850795e_1
- grpcio=1.39.0=py38hdd6454d_0
- gst-plugins-base=1.14.5=h0935bb2_2
- gstreamer=1.18.4=h76c114f_2
- h5py=3.1.0=nompi_py38hafa665b_100
- harfbuzz=2.8.1=h83ec7ef_0
- hdf5=1.10.6=nompi_h6a2412b_1114
- hmmer=3.4=hdbdd923_0
- htslib=1.17=h6bc39ce_1
- icu=68.2=h9c3ff4c_0
- idna=3.6=pyhd8ed1ab_0
- importlib-metadata=7.0.1=pyha770c72_0
- java-jdk=8.0.112=1
- joblib=1.3.2=pyhd8ed1ab_0
- jpeg=9e=h0b41bf4_3
- python=3.8.16=h7a1cb2a_2
- java-jdk
- tensorflow=2.6.0
- keras=2.6.0=pyhd3eb1b0_0
- keras-preprocessing=1.1.2=pyhd8ed1ab_0
- kernel-headers_linux-64=3.10.0=h57e8cba_10
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py38h7f3f72f_1
- krb5=1.20.1=hf9c8cef_0
- lcms2=2.15=hfd0df8a_0
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libaio=0.3.113=h5eee18b_0
- libasprintf=0.22.5=h661eb56_2
- libassuan=2.5.7=h59595ed_0
- libblas=3.9.0=20_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcblas=3.9.0=20_linux64_openblas
- libclang=11.1.0=default_ha53f305_1
- libcurl=7.87.0=h6312ad2_0
- libdeflate=1.17=h0b41bf4_0
- libdevmapper=2.02.187=h7f98852_1
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libevent=2.1.10=h9b69904_4
- libexpat=2.5.0=hcb278e6_1
- libffi=3.3=he6710b0_2
- libgcc-devel_linux-64=13.2.0=hceb6213_107
- libgcc-ng=13.2.0=h807b86a_3
- libgettextpo=0.22.5=h59595ed_2
- libgfortran-ng=13.2.0=h69a702a_3
- libgfortran5=13.2.0=ha4646dd_3
- libglib=2.68.2=h3e27bee_0
- libgomp=13.2.0=h807b86a_3
- libgpg-error=1.50=h4f305b6_0
- libiconv=1.17=hd590300_2
- libidn2=2.3.4=h166bdaf_0
- liblapack=3.9.0=20_linux64_openblas
- libllvm11=11.1.0=he0ac6c6_5
- libnghttp2=1.51.0=hdcd2b5c_0
- libopenblas=0.3.25=pthreads_h413a1c8_0
- libpng=1.6.39=h753d276_0
- libpq=12.15=h37d81fd_1
- libprotobuf=3.16.0=h780b84a_0
- libsanitizer=13.2.0=h6ddb7a1_7
- libsqlite=3.44.2=h2797004_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-ng=13.2.0=h7e041cc_3
- libtiff=4.5.0=h6adf6a1_2
- libunistring=0.9.10=h7f98852_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.2=hd590300_0
- libxcb=1.13=h7f98852_1004
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.9.12=h72842e0_0
- libzlib=1.2.13=hd590300_5
- ltr_retriever=2.9.9=hdfd78af_0
- mafft=7.520=h031d066_3
- markdown=3.5.2=pyhd8ed1ab_0
- markupsafe=2.1.3=py38h01eb140_1
- matplotlib=3.6.2=py38h578d9bd_0
- matplotlib-base=3.6.2=py38h945d387_0
- mpfr=4.2.1=h9458935_0
- multidict=6.0.4=py38h01eb140_1
- munkres=1.0.7=py_1
- mysql-common=8.0.32=h14678bc_0
- mysql-libs=8.0.32=h54cf53e_0
- ncbi-vdb=3.0.10=hdbdd923_0
- nccl=2.18.3.1=h12f7317_0
- ncurses=6.4=h59595ed_2
- ninja-nj=0.98=h4ac6f70_3
- nseg=1.0.1=h031d066_4
- nspr=4.35=h27087fc_0
- nss=3.96=h1d7d5a4_0
- numpy=1.19.5=py38h8246c76_3
- oauthlib=3.2.2=pyhd8ed1ab_0
- openjdk=8.0.112=zulu8.19.0.1_3
- openjpeg=2.5.0=hfec8fc6_2
- openpyxl=3.1.2=py38h01eb140_1
- openssl=1.1.1w=h7f8727e_0
- opt_einsum=3.3.0=pyhc1e730c_2
- ossuuid=1.6.2=hf484d3e_1000
- packaging=23.2=pyhd8ed1ab_0
- pandas=1.4.4=py38h47df419_0
- pango=1.42.4=h69149e4_5
- patsy=0.5.6=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.42=hcad00b1_0
- perl=5.26.2=h36c2ea0_1008
- perl-app-cpanminus=1.7044=pl526_1
- perl-archive-tar=2.32=pl526_0
- perl-business-isbn=3.004=pl526_0
- perl-business-isbn-data=20140910.003=pl526_0
- perl-carp=1.38=pl526_3
- perl-common-sense=3.74=pl526_2
- perl-compress-raw-bzip2=2.087=pl526he1b5a44_0
- perl-compress-raw-zlib=2.087=pl526hc9558a2_0
- perl-constant=1.33=pl526_1
- perl-data-dumper=2.173=pl526_0
- perl-encode=2.88=pl526_1
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-makemaker=7.36=pl526_1
- perl-file-path=2.16=pl526_0
- perl-file-temp=0.2304=pl526_2
- perl-file-which=1.23=pl526_0
- perl-io-compress=2.087=pl526he1b5a44_0
- perl-io-zlib=1.10=pl526_2
- perl-json=4.02=pl526_0
- perl-json-xs=2.34=pl526h6bb024c_3
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-mime-base64=3.15=pl526_1
- perl-parent=0.236=pl526_1
- perl-pathtools=3.75=pl526h14c3975_1
- perl-scalar-list-utils=1.52=pl526h516909a_0
- perl-text-soundex=3.05=pl526_1000
- perl-types-serialiser=1.0=pl526_2
- perl-uri=1.76=pl526_0
- perl-xml-libxml=2.0132=pl526h7ec2d77_1
- perl-xml-namespacesupport=1.12=pl526_0
- perl-xml-sax=1.02=pl526_0
- perl-xml-sax-base=1.09=pl526_0
- perl-xsloader=0.24=pl526_0
- pillow=9.4.0=py38hde6dc18_1
- pip=23.3.2=pyhd8ed1ab_0
- pixman=0.43.0=h59595ed_0
- pp=1.6.4.4=py_0
- protobuf=3.16.0=py38h709712a_0
- pthread-stubs=0.4=h36c2ea0_1001
- pyasn1=0.5.1=pyhd8ed1ab_0
- pyasn1-modules=0.3.0=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pyjwt=2.8.0=pyhd8ed1ab_0
- pyopenssl=23.2.0=pyhd8ed1ab_1
- pyparsing=3.1.1=pyhd8ed1ab_0
- pyqt=5.12.3=py38h578d9bd_8
- pyqt-impl=5.12.3=py38h0ffb2e6_8
- pyqt5-sip=4.19.18=py38h709712a_8
- pyqtchart=5.12=py38h7400c14_8
- pyqtwebengine=5.12.1=py38h7400c14_8
- pysocks=1.7.1=pyha2e5f31_6
- python=3.8.13=haa1d7c7_1
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-flatbuffers=1.12=pyhd8ed1ab_1
- python_abi=3.8=2_cp38
- pytz=2023.3.post1=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- qt=5.12.9=h9d6b050_2
- re2=2021.09.01=h9c3ff4c_0
- readline=8.2=h8228510_1
- recon=1.08=h031d066_6
- repeatmasker=4.1.1=pl5262hdfd78af_2
- repeatmodeler=2.0.1=pl526_0
- repeatscout=1.0.6=hec16e2b_3
- requests=2.31.0=pyhd8ed1ab_0
- requests-oauthlib=1.3.1=pyhd8ed1ab_0
- rmblast=2.14.0=h4565617_2
- rsa=4.9=pyhd8ed1ab_0
- samtools=1.18=hd87286a_0
- biopython=1.78=py38h7f8727e_0
- scikit-learn=1.2.0=py38h6a678d5_1
- scipy=1.9.1=py38hea3f02b_0
- seaborn=0.12.2=hd8ed1ab_0
- seaborn-base=0.12.2=pyhd8ed1ab_0
- setuptools=69.0.3=pyhd8ed1ab_0
- six=1.15.0=pyh9f0ad1d_0
- skopeo=1.15.2=ha8fb2ca_0
- snappy=1.1.10=h9fff704_0
- sqlite=3.44.2=h2c6b66d_0
- statsmodels=0.13.2=py38h71d37f0_0
- sysroot_linux-64=2.17=h57e8cba_10
- tensorboard=2.11.2=pyhd8ed1ab_0
- tensorboard-data-server=0.6.1=py38h2b5fc30_4
- tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
- tensorflow=2.6.0=cuda111py38h48e9d96_2
- tensorflow-base=2.6.0=cuda111py38h152c24c_2
- tensorflow-estimator=2.6.0=cuda111py38h7a887f1_2
- termcolor=1.1.0=pyhd8ed1ab_3
- tesorter=1.4.6=pyhdfd78af_0
- threadpoolctl=3.2.0=pyha21a80b_0
- tk=8.6.13=noxft_h4845f30_101
- tornado=6.3.3=py38h01eb140_1
- trf=4.09.1=h031d066_4
- typing-extensions=3.7.4.3=0
- typing_extensions=3.7.4.3=py_0
- unicodedata2=15.1.0=py38h01eb140_0
- urllib3=2.1.0=pyhd8ed1ab_0
- werkzeug=3.0.1=pyhd8ed1ab_0
- wget=1.20.3=ha56f1ee_1
- wheel=0.42.0=pyhd8ed1ab_0
- wrapt=1.12.1=py38h497a2fe_3
- xopen=0.7.3=py_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.4=h0b41bf4_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.10=h5eee18b_1
- yarl=1.9.4=py38h01eb140_0
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0
- seaborn
- matplotlib
- openpyxl
- rmblast=2.14.0
- repeatmasker=4.1.1
- repeatmodeler=2.0.1=pl526_0
- bedtools=2.30.0
- cd-hit=4.8.1
- samtools
- fuzzysearch
- pip
- pip:
- edlib==1.3.9
- levenshtein==0.23.0
- python-levenshtein==0.23.0
- rapidfuzz==3.6.1
- python-Levenshtein

29 changes: 0 additions & 29 deletions environment_3.0.yml
View file

This file was deleted.

Loading

0 comments on commit c0c31ba

Please sign in to comment.