Fixed bug when use_cell_types == False but cell_type_key is not None

minhgiang174 · Jan 23, 2023 · 25d99e9 · 25d99e9
1 parent 1c652a0
commit 25d99e9
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/spectra/spectra.py b/spectra/spectra.py
@@ -1175,7 +1175,7 @@ def est_spectra(adata, gene_set_dictionary, L = None,use_highly_variable = True,
         X = adata.X
         vocab = adata.var_names 
 
-    if cell_type_key is not None:
+    if use_cell_types:
         labels = adata.obs[cell_type_key].values
         for label in np.unique(labels):
             if label not in gene_set_dictionary: