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Update README.md
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wallet-maker authored Feb 7, 2023
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Expand Up @@ -46,6 +46,8 @@ You can use log1p transformed median library size normalized data. Most benchmar

https://github.com/dpeerlab/spectra/blob/main/notebooks/scran_preprocessing.ipynb

An R script to run scran can be found in the preprocessing folder of this repository.

# Example Data Download:
Data used for the examples can be found in the data folder of this package (https://github.com/dpeerlab/spectra/tree/main/data): This is a subsetted version of the Bassez et al. Nature Medicine (https://doi.org/10.1038/s41591-021-01323-8) preprocessed by scran and emptydrops with annotated cell types.

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