miramastoras
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phoenix_batch_submissions Public
Code for running pipelines in batches on UCSC phoenix cluster
Shell UpdatedJan 16, 2025 -
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hpp_production_workflows Public
Forked from human-pangenomics/hpp_production_workflowsWDL’s and Dockerfiles for assembly QC process
Jupyter Notebook MIT License UpdatedDec 11, 2024 -
centromere-scripts Public
Forked from jeizenga/centromere-scriptsPython MIT License UpdatedDec 3, 2024 -
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deeppolisher Public
Forked from google/deeppolisherTransformer-based sequence correction method for genome assembly polishing
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedJun 21, 2024 -
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element_polishing Public
Developing methods for assembly polishing with element data
Python UpdatedFeb 7, 2024 -
bmeb_bootcamp_2023 Public
project materials for UCSC BMEB incoming cohort bootcamp, Sept 2023
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card_nanopore_wf Public
Forked from nanoporegenomics/napu_wfWDL workflows for variant calling and assembly using ONT
WDL Other UpdatedMay 23, 2023 -
useful_scripts Public
Where I keep useful bioinformatics scripts I may need again...
Python UpdatedMay 1, 2023 -
secphase Public
Forked from mobinasri/secphasePhasing reads with secondary alignments
C MIT License UpdatedApr 28, 2023 -
CDR_detect Public
Contains methods for detecting CDRs in methyl-tagged long read data
Python UpdatedJan 4, 2023 -
bmeb_bootcamp_2022 Public
project materials for UCSC BMEB incoming cohort bootcamp, Sept 2022
Python UpdatedSep 16, 2022