[CVPR'25] Official Implementations for Paper - MagicQuill: An Intelligent Interactive Image Editing System

Tutorials on phylogenomic analyses for the ForBio Phylogenomics course

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species

Topology weighting by iterative sampling of sub-trees

Estimating Effective Migration Surfaces

Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates a consensus tree. It plots the maximum likelihood tree with…

Infer demographic history with the Moran model

📮 A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

GWAS Tutorial for Beginners

📊 Circular and Rectangular Manhattan Plot

Scripts for my goose projects

SMC++ infers population history from whole-genome sequence data.

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

R package and web app for spatial visualisation of admixture on a projected map

Automatically exported from code.google.com/p/jmodeltest2

Software for painlessly estimating average nucleotide diversity within and between populations

Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file

general purpose library for evaluating the likelihood of sequence evolution on trees

Joint inference of heterozygosity rates and runs of homozygosity

RAxML Next Generation: faster, easier-to-use and more flexible

General tools for genomic analyses.

parameter files for fastsimcoal2