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Commits on Apr 1, 2019

• v1.0.0 🍾

  mlin

  committed
  8851a12

Commits on Mar 26, 2019

• configurable resolution for DP squeezing (#21)

  Show description for 1f978ea
  mlin

  authored
  1f978ea

Commits on Mar 14, 2019

• expand WDL

  mlin

  committed
  a90e5c0

Commits on Mar 13, 2019

• wdl v0.7.0

  mlin

  committed
  1fbc83d

• change ##fileformat to and fro

  Show description for 453b795
  mlin

  committed
  453b795

• htslib 1.9

  mlin

  committed
  1eac726

• encode: make QC-squeezing opt-out instead of opt-in

  mlin

  committed
  b41d226

Commits on Feb 5, 2019

• Update SPEC.md

  mlin

  authored
  2d892c8

• a bit of input validation (closes #14)

  mlin

  committed
  1023cd0

Commits on Oct 16, 2018

• Update spvcf.wdl

  mlin

  authored
  3459ade

Commits on Oct 14, 2018

• Update README.md

  mlin

  authored
  01c37d1

Commits on Oct 4, 2018

• Update README.md

  mlin

  authored
  87e55da

Commits on Oct 2, 2018

• Spec change: never quote-encode cells whose genotypes aren't reference-identical or non-called

  Show description for 140334c
  mlin

  committed
  140334c

Commits on Aug 29, 2018

• Multithreaded encoder (#13)

  Show description for 4b9e325
  mlin

  authored
  4b9e325

Commits on Aug 27, 2018

• Improve stdin/stdout streaming performance

  mlin

  committed
  ed56b3d

Commits on Aug 23, 2018

• Fix - as input filename

  mlin

  committed
  b13820a

Commits on Aug 22, 2018

• squeeze: omit trailing run of missing fields even in cells that aren't lossily truncated

  mlin

  committed
  1b941ad

Commits on Aug 15, 2018

• expose 'spvcf squeeze' subcommand to squeeze (but not sparse encode) pVCF

  mlin

  committed
  99062d7

Commits on Aug 1, 2018

• move SPEC.md into doc/

  mlin

  committed
  b9050bc

Commits on Jul 31, 2018

• Update compression_results.md

  mlin

  authored
  5e95011

Commits on Jul 29, 2018

• Update README.md

  mlin

  authored
  d36c1f2

• Add SPEC.md (#12)

  mlin

  authored
  800ddf0

Commits on Jul 28, 2018

• cleanup CMakeLists

  mlin

  committed
  aef28ba

• Update spvcf.wdl

  mlin

  committed
  7cc96ec

Commits on Jul 21, 2018

• Update README.md

  mlin

  committed
  f5257b5

• tabix slicing

  Show description for 624a29f
  mlin

  committed
  624a29f

• change command-line interface to have subcommands (BREAKING)

  mlin

  committed
  4bc11fa

• On each sparse line, convey the POS of the last full dense row (checkpoint)

  Show description for 2eb8e4d
  mlin

  committed
  2eb8e4d

• checkpoint at the start of each chromosome

  mlin

  committed
  7f24b52

Commits on Jul 15, 2018

• unbuffered output

  mlin

  committed
  9281f90

Commits on Jul 10, 2018

• Update compression_results.md

  mlin

  authored
  35c7633

• Update compression_results.md

  mlin

  authored
  71fb119

• update compression figures

  mlin

  committed
  772c1fb

Commits on Jul 9, 2018

• Update compression_results.md

  mlin

  authored
  cf4589b

• Update README.md

  mlin

  authored
  0b93509

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