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Commits on Oct 29, 2023

• --with-missing-fields: fill missing AD with {DP},0 (#30)

  mlin

  authored
  746deea

Commits on Oct 2, 2023

• --with-missing-fields: pad AD & PL to expected vector length (#29)

  Show description for b25626d
  mlin

  authored
  b25626d

Commits on Jun 4, 2023

• add --with-missing-fields decoder option (#28)

  Show description for 53ecc90
  mlin

  authored
  53ecc90

Commits on Jun 2, 2023

• ensure up-to-date libdeflate is used

  mlin

  committed
  58f5311

• update to htslib 1.17 and libdeflate 1.18 (#27)

  mlin

  authored
  499de72

Commits on Jan 7, 2022

• add GitHub Actions build, modernizing docker image & WDL

  mlin

  committed
  becb461

• Fix dropped QC field in cells without DP

  Show description for 27bbcd0
  mlin

  committed
  27bbcd0

Commits on Dec 18, 2020

• app note doi

  mlin

  authored
  5bb4229

Commits on Nov 10, 2020

• Fail-fast if libdeflate isn't available

  mlin

  committed
  46e1bcb

Commits on Aug 27, 2020

• Update README.md

  mlin

  committed
  4ad2c29

• Update README.md

  mlin

  committed
  24a03aa

• Update README.md

  mlin

  authored
  b90949c

Commits on Aug 4, 2020

• update deploy key

  mlin

  committed
  05ddde6

• modernize WDL

  mlin

  committed
  0ac63a1

Commits on Aug 3, 2020

• htslib 1.10

  mlin

  committed
  606ba80

Commits on Nov 5, 2019

• reduce buffer reallocation in multithreaded encoder

  mlin

  committed
  eecbf34

Commits on May 16, 2019

• Update README.md

  mlin

  authored
  1db5435

• Create 1000G_NYGC_GATK.md

  mlin

  authored
  74cc9ce

Commits on Apr 19, 2019

• Update README.md

  mlin

  authored
  25b7880

Commits on Apr 18, 2019

• Update README.md

  mlin

  authored
  8780980

• Update README.md

  mlin

  authored
  6ca3a2a

Commits on Apr 1, 2019

• v1.0.0 🍾

  mlin

  committed
  8851a12

Commits on Mar 26, 2019

• configurable resolution for DP squeezing (#21)

  Show description for 1f978ea
  mlin

  authored
  1f978ea

Commits on Mar 14, 2019

• expand WDL

  mlin

  committed
  a90e5c0

Commits on Mar 13, 2019

• wdl v0.7.0

  mlin

  committed
  1fbc83d

• change ##fileformat to and fro

  Show description for 453b795
  mlin

  committed
  453b795

• htslib 1.9

  mlin

  committed
  1eac726

• encode: make QC-squeezing opt-out instead of opt-in

  mlin

  committed
  b41d226

Commits on Feb 5, 2019

• Update SPEC.md

  mlin

  authored
  2d892c8

• a bit of input validation (closes #14)

  mlin

  committed
  1023cd0

Commits on Oct 16, 2018

• Update spvcf.wdl

  mlin

  authored
  3459ade

Commits on Oct 14, 2018

• Update README.md

  mlin

  authored
  01c37d1

Commits on Oct 4, 2018

• Update README.md

  mlin

  authored
  87e55da

Commits on Oct 2, 2018

• Spec change: never quote-encode cells whose genotypes aren't reference-identical or non-called

  Show description for 140334c
  mlin

  committed
  140334c

Commits on Aug 29, 2018

• Multithreaded encoder (#13)

  Show description for 4b9e325
  mlin

  authored
  4b9e325

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