--with-missing-fields: fill missing AD with {DP},0 (#30)

--with-missing-fields: pad AD & PL to expected vector length (#29)

For now all sites must be biallelic. (Can be generalized in the future.)

add --with-missing-fields decoder option (#28)

In each cell, appends `:.` for each omitted, trailing FORMAT field. Faster than piping through `bcftools view` to achieve the same.

annotated tag for v1.1.0

retroactively annotating v1.0.0 tag

Fail-fast if libdeflate isn't available

wdl v0.7.0

Spec change: never quote-encode cells whose genotypes aren't referenc…

…e-identical or non-called

This ensures all non-reference genotypes on a row can be read without reference to any previous row, a significant convenience in exchange for a negligible size increase.

Multithreaded encoder (#13)

The encoder can run multithreaded by buffering batches of input lines and processing each batch in a worker thread. In favorable circumstances this yields higher throughput than the default single-threaded approach, but there is a trade-off of greatly increased memory usage and copying. Activated with -t,--threads.