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Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿🔬
Brian is a free, open source simulator for spiking neural networks.
Code to accompany the textbook "Modeling Neural Circuits Made Simple"
Repository for example implementation of spatially-embedded RNNs. See https://www.jachterberg.com/seRNN for more information.
Tips for Writing a Research Paper using LaTeX
Comparative analysis of pairwise interactions in multivariate time series.
Spindle Detection Algorithm based on Sequential Power Spectral Density (SPSD)
A collection of inspiring lists, manuals, cheatsheets, blogs, hacks, one-liners, cli/web tools and more.
Data driven modeling and automated discovery of dynamical systems for the SciML Scientific Machine Learning organization
Reservoir computing utilities for scientific machine learning (SciML)
Digital signal processing for neural time series.
MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Browser-based NWB visualization and DANDI exploration
Custom code used in Le Merre and Heining et al.: "A Prefrontal Cortex Map based on Single Neuron Activity" (https://doi.org/10.1101/2024.11.06.622308 ).
Figures, tables and stats for Schneider, Lee and Mathis 2022: Learnable latent embeddings for joint behavioral and neural analysis.
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
Publication-ready visualization of overlays of imagery and segmentation from cloudvolume data
Unsupervised time series anomaly detection library
NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
Linked Data Interface (LINDI) - cloud-friendly access to NWB data
Machine Learning Course, Sharif University of Technology
Volcano Plot for Gene Expression Analysis
Brain decoding using graph convolutional network on fMRI time-series
Shared repo for EM connectomics and Array Tomography render based image processing modules