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Commits on Aug 7, 2021

• r1094: for --split-prefix update max_dp at the end

  lh3

  committed
  8a1d52b

Commits on Jul 19, 2021

• dev-r1080: fixed negative dp_max

  lh3

  committed
  1a8373b

• dev-r1079: per-read error rate

  Show description for 161ae7f
  lh3

  committed
  161ae7f

Commits on Jul 18, 2021

• dev-r1078: decoupling ranking penalty

  lh3

  committed
  8a6edab

Commits on Jul 17, 2021

• dev-r1076: log gap penalty

  lh3

  committed
  2546999

Commits on Jul 16, 2021

• fixed potential integer overflows

  lh3

  committed
  5f449c5

• Merge branch 'master' into utec

  lh3

  committed
  b046052

Commits on Jul 2, 2021

• Use #defines for CIGAR operators in C code

  Show description for 260a68d
  

  jmarshall

  authored and

  lh3

  committed
  260a68d

• Use the full MIDNSHP=X string whenever printing CIGAR strings

  Show description for 177eef2
  

  jmarshall

  authored and

  lh3

  committed
  177eef2

Commits on May 24, 2021

• r1048: rescue long gaps

  lh3

  committed
  4f91558

Commits on Apr 8, 2021

• r1012: fixed an off-by-one bug; resolves lh3#489

  lh3

  committed
  827ca4b

Commits on Jun 12, 2020

• Initialize r->p if ez->zdropped

  

  armintoepfer

  authored and

  lh3

  committed
  c9874e2

Commits on Apr 21, 2020

• r985: optionally report cs/cg on the query strand

  Show description for da7109f
  lh3

  committed
  da7109f

Commits on Jan 21, 2020

• r973: fixed compiling errors caused

  lh3

  committed
  a7a01fe

• support ALT mapping

  lh3

  committed
  eb3ed69

Commits on May 1, 2019

• r935: fixed a cigar like 5I6D7I; resolved lh3#392

  lh3

  committed
  69af866

Commits on Apr 28, 2019

• implemented in exts; testing is the next

  lh3

  committed
  be171aa

Commits on Jan 10, 2019

• r904: fixed a corner-case segfault. Resolves lh3#307.

  lh3

  committed
  cf2bae6

Commits on Nov 18, 2018

• r888: fixed incorrect CIGAR when --eqx in use

  Show description for 83a8ee7
  lh3

  committed
  83a8ee7

Commits on Nov 6, 2018

• r881: a recent change reduces sr accuracy

  lh3

  committed
  88c421e

Commits on Nov 5, 2018

• r876: skip DP if taking too much RAM (lh3#259)

  lh3

  committed
  1398140

Commits on Oct 23, 2018

• r858: fixed a bug; resolves lh3#254

  lh3

  committed
  377c709

Commits on Oct 16, 2018

• r852: a minor when large --end-bonus is in use

  Show description for d04ac06
  lh3

  committed
  d04ac06

Commits on Aug 5, 2018

• r822: added option --no-end-flt

  lh3

  committed
  5ab6538

Commits on Jul 15, 2018

• working with toy examples

  lh3

  committed
  4b707aa

• apparently mm_append_cigar() wastes some memory

  lh3

  committed
  951c0d1

Commits on Jun 20, 2018

• r794: fixed a bug in seed filtering

  lh3

  committed
  66674af

Commits on Jun 19, 2018

• r792: fixed -Wextra warnings and resolved lh3#184

  lh3

  committed
  7e6e8ca

• Fix CIGAR reallocation with --eqx

  Show description for 3d3bcc2
  

  Aaron Wenger

  authored and

  lh3

  committed
  3d3bcc2

Commits on May 30, 2018

• r784: support the =/X CIGAR operators (lh3#156)

  lh3

  committed
  154d2ca

• r783: reverted to r781 (lh3#155)

  lh3

  committed
  a3afeec

Commits on May 11, 2018

• r777: avoid skipping too many seeds

  lh3

  committed
  9f4309c

• r774: Merge branch 'hot-fix' into fix-long-gap

  lh3

  committed
  881b4ca

Commits on May 1, 2018

• reduced gap len to trigger bad seed filtering

  lh3

  committed
  e61812e

Commits on Apr 30, 2018

• r770: matching N bases not working properly (lh3#155)

  lh3

  committed
  734ac37

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