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Commits on Oct 1, 2021

• updated manuscript

  lh3

  committed
  7ee62da

Commits on Aug 8, 2021

• fixed typos

  lh3

  committed
  cc14d1a

Commits on Aug 7, 2021

• removed one extra sentence

  lh3

  committed
  bb3048b

• improved manuscript

  lh3

  committed
  5113ca2

• a different ending sentence

  lh3

  committed
  a05edfa

• finished the first draft

  lh3

  committed
  8e81145

• finished results

  lh3

  committed
  e37f5ff

Commits on Aug 6, 2021

• minimap2 update manuscript

  lh3

  committed
  70393eb

Commits on Mar 16, 2018

• Revision v2

  lh3

  committed
  b81d455

• response to reviewers' comments, round 2

  lh3

  committed
  d135feb

Commits on Feb 9, 2018

• Revision 1

  lh3

  committed
  6e65c5e

• extend the section on genome alignment

  lh3

  committed
  a58b05a

Commits on Feb 7, 2018

• Revision v1, to be submitted

  lh3

  committed
  01560f1

Commits on Feb 6, 2018

• first round of revision

  lh3

  committed
  3953556

Commits on Jan 2, 2018

• deleted duplicated entries

  lh3

  committed
  680b971

Commits on Dec 25, 2017

• new section on HPC k-mers

  lh3

  committed
  f159e1c

Commits on Dec 24, 2017

• fixed two minor typos in references

  lh3

  committed
  ce8a48d

• a new section on estimating sequence divergence

  lh3

  committed
  99879e9

• updated direct RNA-seq results; cite syndip

  Show description for c969d1a
  lh3

  committed
  c969d1a

Commits on Nov 6, 2017

• this will become version 3 at arXiv

  lh3

  committed
  1617b87

Commits on Nov 5, 2017

• two discussion paragraphs; need one more

  lh3

  committed
  2191ac5

• moved conclusion to result; need new discussion

  lh3

  committed
  c2b0935

Commits on Nov 2, 2017

• added bowtie2 and snap versions

  lh3

  committed
  52ffbc9

• added two bowtie2 numbers for comparison

  lh3

  committed
  a9790c0

• updated the tech note

  lh3

  committed
  d0ac78a

Commits on Oct 22, 2017

• a bit more on short read mapping

  Show description for 1dd221a
  lh3

  committed
  1dd221a

Commits on Oct 21, 2017

• r526: fixed a bug when HPC is in use

  Show description for beeb806
  lh3

  committed
  beeb806

Commits on Oct 20, 2017

• r524: reverted to bwa-mem end bonus

  Show description for bd04372
  lh3

  committed
  bd04372

• updated text (unfinished)

  lh3

  committed
  55dcbef

• replaced mapQ plot with sr roc

  Show description for 8abba33
  lh3

  committed
  8abba33

Commits on Oct 7, 2017

• r486: treat "U" as "T" for RNA reads (lh3#33)

  lh3

  committed
  bf2d4f7

Commits on Oct 6, 2017

• 150bp mason2 simulation

  lh3

  committed
  2833a9c

Commits on Sep 21, 2017

• added GMAP iso-seq numbers

  lh3

  committed
  1c948e0

Commits on Aug 25, 2017

• various minor improvements

  lh3

  committed
  2641613

Commits on Aug 24, 2017

• backup manuscript

  lh3

  committed
  240f6ca

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