added support for fusion novelty type in the abundance utility

Merge pull request #139 from mortazavilab/230921_update

Readthrough transcription support and improved gene assignment

Merge branch 'master' of github.com:dewyman/TALON

added tested version of get_transcript_sjs

Added test case to cover user-reported bug in which a read that was s…

…upposed to be Genomic was misclassified as Intergenic

Modified abundance utility so that datasets get listed in same order …

…as datasets file

Updated version tag

Updated commands to match modifications in setup.py

Merge branch 'master' of github.com:dewyman/TALON

Changed n_places to 9