OpenCFU

About

OpenCFU is a C++ program originally used to enumerate colonies through a GUI. libcolonyfind relies heavily on this program to function. See the libcolonyfind docs for more info. Because OpenCFU cannot properly parse command-line arguments in Windows, OpenCFU must be built in WSL and invoked from Windows.

See the datasheets for the OpenCFU reference paper

Installation

sudo apt update && sudo apt install libopencv-dev

git clone https://github.com/msudesigncpr/OpenCFU.git

cd OpenCFU

autoreconf -i

./configure --without-gui

automkae --add-missing

make

./opencfu -h

Warning

Define this path in constants.py

See the libcolonyfind docs for more info