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Tool for fully-automated inference of species trees from raw genome assemblies
A linter for Nextflow built on top of the Nextflow Language Server
Pipeline to fetch metadata and raw FastQ files from public databases
Python package with helper tools for the nf-core community.
Repository to host tool-specific module files for the Nextflow DSL2 community!
Config files used to define parameters specific to compute environments at different Institutions
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Natural language search across the tree of life
Biological foundation modeling from molecular to genome scale
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).
Mixbox is a library for natural color mixing based on real pigments.
Notebooks using the Hugging Face libraries 🤗
A Nextflow workflow to generate lift over files for any pair of genomes
Pipelines to turn basic genomic data into Ensembl cores and back
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
Repository containing gitpod configuration for creating and testing bioconda recipes.
A DSL for data-driven computational pipelines
An assembly workflow for analysing data in the Earth Biogenome Project pilot project.
UK postcode & geolocation API, serving up open data
This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files