This project implements models for Protein-Protein Interaction (PPI) prediction, focusing on graph-based methods such as the SOTA GNN model call GIPA.

Protein function prediction using deep neural networks

Multi-model approach for Protein function prediction using protein sequence, structure and PPI networks

DualNetGO: A Dual Network Model for Protein Function Prediction via Effective Feature Selection

A Protein Function Prediction Method Based on Group Correlation

ProteinGGT, a generalized graph transformer based method designed for protein function prediction in out-of- distribution scenarios.

This is implementation of project: "Improving Protein-centric Maximum F-measure in Protein Function Prediction with Relationships Among Gene Functions"

Transformer for protein function prediction (version 2)

ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function prediction

New ways of breaking app-integrated LLMs

Agri-Inn | A web based application built passionately with SvelteKit for Software Engineering course in United International University

A curated list of awesome Bioinformatics libraries and software.

PLUR (Programming-Language Understanding and Repair) is a collection of source code datasets suitable for graph-based machine learning. We provide scripts for downloading, processing, and loading t…