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Commits on Nov 1, 2023

• Adds tests for ChEBI codes in pileup and adjust mods.

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Commits on Aug 21, 2023

• [adjust] when using edge filter, convert MM flag to ?.

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Commits on Jul 3, 2023

• [extract] Adds ref_mod_strand and modified_primary_base cols.

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Commits on May 3, 2023

• Moves documentation folder.

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Commits on May 2, 2023

• Book-docs ready for review.

  ArtRand

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Commits on Apr 19, 2023

• First part of a larger refactor that allows for multiple thresholds per canonical base.

  ArtRand

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Commits on Apr 5, 2023

• Removes changelog entries used for testing.

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Commits on Mar 9, 2023

• [pileup] adds combining of strand counts.

  ArtRand

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Commits on Jan 2, 2023

• [wip] Bottom-up implementation of multi-mod modBamToBed.

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Commits on Dec 5, 2022

• Initial commit, first pass impl.

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