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Commits on Jan 19, 2024

• PD-4856 Allow multiple Blast Rules for the same protein

  

  Vyacheslav Brover

  committed
  5a38c31

Commits on Dec 18, 2023

• PD-4838 adding '*' to the ends of reference proteins

  

  Vyacheslav Brover

  committed
  99cb407

Commits on Oct 5, 2023

• PD-4754 prodigal; PD-4761 proteins with >= 20 Xs from the input protein FASTA file are removed

  

  Vyacheslav Brover

  committed
  ad4a74b

Commits on Oct 2, 2023

• PD-4755 calling fusion2geneSymbols() for a mutation protein

  

  Vyacheslav Brover

  committed
  ec148fc

Commits on Apr 13, 2023

• PD-4566,PD-4548 --hmmer_bin; fasta_check.cpp prohibits '\t' (not any '\'), and all restrictions are only for nucleotide sequences

  

  Vyacheslav Brover

  committed
  fa70613

Commits on Apr 5, 2023

• PD-4522,PD-4548 blastp -task blastp-fast, -a standard, fasta_extract.cpp checks whether all requested identifiers are found in FASTA

  

  Vyacheslav Brover

  committed
  3d43cc4

Commits on Mar 31, 2023

• PD-4548 GFF can have '%<hex>' characters

  

  Vyacheslav Brover

  committed
  6d19b07

Commits on Mar 24, 2023

• PD-4522 tblastn is faster

  

  Vyacheslav Brover

  committed
  d0941be

Commits on Mar 21, 2023

• PD-4533 incorrect trimming of leading underscores in contig names

  

  Vyacheslav Brover

  committed
  43eb404

Commits on Aug 4, 2022

• PD-4264 --annotation_format is restored, amr_report is faster, -a patric allows 'accn|' in nucleotide FASTA, -a pseudomonasdb

  vbrover

  committed
  34aef06

Commits on Aug 1, 2022

• PD-4264 prokka and bakta have nucleotide FASTA in GFF files

  vbrover

  committed
  3303dd1

Commits on Jul 31, 2022

• PD-4264 new parameter --annotation_format

  vbrover

  committed
  ac7cc5e

Commits on Jul 29, 2022

• PD-4274 "amrfinder -u" crashes if the directiry "data/" already exists; PD-4264 GFF code refactoring

  vbrover

  committed
  710be7d

Commits on Mar 24, 2021

• PD-3761 amrfinder --help will not break if /tmp is full

  vbrover

  committed
  531affa

Commits on Mar 24, 2020

• PD-3347 -lcl parameter in gff_check and amr_report

  vbrover

  committed
  45f1afd

Commits on Jan 10, 2020

• version 3.6.8: PD-3329 (symbolic link invocation); 'rm' dependence is removed; 'gnl|' processing is simplified

  vbrover

  committed
  ee7f1d9

Commits on Dec 18, 2019

• PD-3269 --gpipe is removed, --pgapx --> --pgap

  vbrover

  committed
  820aaed

Commits on Dec 16, 2019

• PD-3279 --pgapx can be applied to GPIpe-GenColl assemblies, new option --gpipe_org

  vbrover

  committed
  7794076

Commits on Dec 13, 2019

• PD-3269 --pgapx flag is added

  vbrover

  committed
  c3466b2

Commits on May 15, 2019

• g++ version 7.3.0

  vbrover

  committed
  9bc0f29

Commits on Jan 10, 2019

• PD-2308 spaces in GFF file are trimmed

  vbrover

  committed
  cc52d89

Commits on Dec 19, 2018

• Initial version 2 github commit

  evolarjun

  committed
  a3a935a

Commits on Nov 20, 2018

• In with the 'new' perl

  

  Douglas Slotta

  committed
  8ad22f5

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