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1. CITE-count CITE-count Public

   Read and QC totalseq A fastq files and export count ADT matrix, merge with sc RNASeq data and export to scanpy

   Jupyter Notebook 1

2. LJI_RNA_SEQ_PIPELINE_V2 LJI_RNA_SEQ_PIPELINE_V2 Public

   Snakemake based RNA-Seq QC pipeline for cloud/cluster implementation

   Python 4

3. Dap-Seq-pipeline Dap-Seq-pipeline Public

   TF-DNA-binding assay analysis pipeline

   Jupyter Notebook 12 5

4. MetaGenomics-vis-pipeline MetaGenomics-vis-pipeline Public

   Functions for creating diversity plots using plotly

   HTML 1

5. Cobra_Flux_model Cobra_Flux_model Public

   Jupyter Notebook

6. Random_useful_scripts Random_useful_scripts Public

   Jupyter Notebook