An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads

Oxford Nanopore's Basecaller

Reference-guided transcript discovery and quantification for long read RNA-Seq data

R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions

A curated list of awesome nanopore analysis tools.

Scripts used during the development of Ninetails package

Docker image for analyses using RStudio and Python-Conda

This package contains most of the functions required in poly(A) tail research, including tail recognition from sequence, tail length calculation, non-A base recognition and quantifying tail, PA sit…

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads

R Markdown: The Definitive Guide (published by Chapman & Hall/CRC in July 2018)

jupyter notebooks for Parker et al. eLife 2019

Custom script collection for nanopore sequencing-based Isoform Dynamics (nano-ID), a method that detects newly synthesized RNA isoforms and monitors isoform metabolism. nano-ID combines metabolic R…

Thin docker image for Python and R

Department of Molecular Phylogenetics and Evolution repository

Useful bash one-liners for bioinformatics.