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Commits on Nov 22, 2024

• fix: quartonotebook imported over multiple lines which broke detect-nf-test-changes (#7063)

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• Update detect-nf-test-changes which includes tag filtering and multi-line include statements (#7065)

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Commits on Nov 20, 2024

• Purge CI workspace before running using GPU (#7039)

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• Purge the workspace for the self-hosted runners (#7037)

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Commits on Oct 31, 2024

• Add FASTQE module (#6914)

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Commits on Aug 14, 2024

• Maximises Sentieon BWA Mem memory usage (#6167)

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• Update to Sentieon Haplotyper to support multiple BAM files (#6171)

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Commits on Aug 12, 2024

• Add Sentieon CollectVCMetrics module (#6161)

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Commits on Aug 8, 2024

• Fix: Sentieon CoverageMetrics error in meta values (#6141)

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Commits on Aug 7, 2024

• Add Sentieon CoverageMetrics module (#6122)

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• Replace bedtools sort with unix sort in BEDTOOLS_GENOMECOV (#6063)

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Commits on Aug 3, 2024

• Separate output for goleft/indexcov and pytest to nf-test migration (#6098)

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Commits on Jul 31, 2024

• Fix bug in sentieon/qualcal where stubs failed (#6068)

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Commits on May 25, 2024

• Add metamap to viennarna/rnafold module (#5675)

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Commits on May 22, 2024

• Remove cp operation from bclconvert with Nextflow output operation (#5662)

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Commits on May 8, 2024

• Do not trigger test on update of master branch (#5575)

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Commits on May 1, 2024

• Try alternative strategy for extracting tags (#4928)

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Commits on Mar 19, 2024

• Fix test for FASTQ_FASTQC_UMITOOLS_FASTP which included an absolute path in the snapshot. (#5278)

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• More tests for FASTQ_FASTQC_UMITOOLS_FASTP (#5179)

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Commits on Mar 1, 2024

• nf-test to FASTQ_FASTQC_UMITOOLS_TRIMGALORE and pin cutadapt in trimgalore (#4925)

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Commits on Feb 29, 2024

• nf-test for FASTQ_ALIGN_HISAT2 (#4887)

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Commits on Feb 26, 2024

• Update paths in subread/featurecounts (#4977)

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Commits on Feb 23, 2024

• Update paths in summarizedexperiment (#4978)

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Commits on Feb 12, 2024

• CHORES: Update STRINGTIE module to use path rather than map (#4879)

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  maxulysse

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• CHORES: Update TRIMGALORE module to use path rather than map (#4874)

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• CHORES: Update SUBREAD_FEATURECOUNTS module to use path rather than map (#4883)

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• CHORE: UCSC modules update test data paths (#4881)

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• CHORES: Update salmon modules to use path rather than map (#4870)

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• CHORES: Update rseqc/tin to use path rather than map (#4868)

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• CHORES: rseqc/readdistribution test path update (#4866)

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• CHORES: Update rsem/calculateexpression to use path rather than map (#4859)

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• Use global SETUP for making index for STAR_ALIGN tests (#4871)

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Commits on Feb 9, 2024

• CHORE: Update UMITOOLS_EXTRACT test data path (#4882)

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Commits on Feb 7, 2024

• CHORES: rseqc/bamstat test path update (#4861)

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  sateeshperi

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• CHORES: Update sortmerna modules to use path rather than map (#4873)

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