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Commits on Dec 11, 2024

• update parabricks/applybqsr (#7189)

  Show description for 4912a73
  famosab

  authored
  4912a73

• Port parabricks/dbsnp to nf-test (#6977)

  Show description for 356e5e6
  

  famosab

  and

  nf-core-bot

  authored
  356e5e6

• port parabricks/indexgvcf to nf-test (#6996)

  Show description for a62c798
  

  famosab

  and

  mashehu

  authored
  a62c798

Commits on Dec 10, 2024

• port parabricks/genotypegvcf to nf-test (#6980)

  Show description for 51145aa
  

  3 peopleauthored
  51145aa

Commits on Dec 2, 2024

• Add module muse/sump (#5629)

  Show description for 8e17f28
  

  famosab

  and

  SPPearce

  authored
  8e17f28

Commits on Nov 29, 2024

• Add module muse/call (#5630)

  Show description for 219299d
  famosab

  authored
  219299d

Commits on Oct 30, 2024

• adjust io of fq2bam to be consistent (#6906)

  Show description for adf071f
  famosab

  authored
  adf071f

Commits on Sep 25, 2024

• add more stubs gatk4 (#6673)

  Show description for 679f45c
  famosab

  authored
  679f45c

• add stubs gatk4 (#6672)

  Show description for 6b3bf38
  famosab

  authored
  6b3bf38

Commits on Sep 16, 2024

• flye: fix nf-test, update module (#6613)

  Show description for e2b2fde
  

  famosab

  and

  SPPearce

  authored
  e2b2fde

Commits on Sep 3, 2024

• wgsim: add seed option, add stub, update test, match readsimulator pipeline (#6544)

  Show description for fe20ce2
  

  famosab

  and

  fellen31

  authored
  fe20ce2

Commits on Aug 27, 2024

• New sections for further module info (#5876)

  Show description for 3ea7efe
  famosab

  authored
  3ea7efe

Commits on Aug 8, 2024

• port strelka-somatic subwf from sarek (#6094)

  Show description for fd2660d
  famosab

  authored
  fd2660d

Commits on Aug 7, 2024

• add config option to wittyer module (#6111)

  Show description for 7ddfa12
  famosab

  authored
  7ddfa12

Commits on Aug 3, 2024

• swap to nf-test assertions to nft-bam for bwa modules (#6092)

  Show description for 2201e21
  famosab

  authored
  2201e21

Commits on Jul 12, 2024

• port gridss/gridss to nf-test (#5933)

  Show description for c349214
  

  famosab

  and

  maxulysse

  authored
  c349214

Commits on Jun 27, 2024

• ariba/getref port to nf-test, add meta to tuple and stub (#5877)

  Show description for 6b95d8c
  famosab

  authored
  6b95d8c

Commits on Jun 26, 2024

• new module: datavzrd (#5883)

  Show description for 320e735
  

  famosab

  and

  vickylaram

  authored
  320e735

Commits on Jun 24, 2024

• produce stub files (#5875)

  famosab

  authored
  89d1482

• add stub and stub test to chromap, change test names (#5872)

  Show description for 4bd9481
  famosab

  authored
  4bd9481

Commits on Jun 10, 2024

• change test for cnvkit/antitarget to be more general (#5783)

  Show description for fc58147
  famosab

  authored
  fc58147

• change test for cnvkit/reference to be more generalized (#5782)

  Show description for 15ebdff
  famosab

  authored
  15ebdff

Commits on May 16, 2024

• port gatk4/getpileupsummaries to nf-test (#5617)

  Show description for b632dcb
  famosab

  authored
  b632dcb

• port gatk4/createsequencedictionary to nf-test (#5615)

  Show description for e6fe277
  

  famosab

  and

  maxulysse

  authored
  e6fe277

• port gatk4/mergemutectstats to nf-test (#5616)

  Show description for cafe911
  famosab

  authored
  cafe911

Commits on May 15, 2024

• port gatk4/applyvqsr to nf-test (#5604)

  Show description for cee8fe3
  famosab

  authored
  cee8fe3

• port gatk4/calculatecontamination to nf-test (#5603)

  Show description for 77ffba9
  famosab

  authored
  77ffba9

• port to gatk4-filtermutectcalls nf-test (#5605)

  Show description for 7d81481
  famosab

  authored
  7d81481

Commits on May 13, 2024

• port cnvkit/reference to nf-test and update cnvkit (#5595)

  Show description for f8693ff
  famosab

  authored
  f8693ff

• port cnvkit/antitarget to nf-test and update cnvkit (#5594)

  Show description for 7d8eff8
  famosab

  authored
  7d8eff8

Commits on Apr 2, 2024

• port controlfreec/freec2circos to nf-test (#5377)

  Show description for b626cd7
  famosab

  authored
  b626cd7

• port controlfreec-freec2bed to nf-test (#5397)

  Show description for 0c7fd54
  famosab

  authored
  0c7fd54

Commits on Mar 28, 2024

• port controlfreec-makegraph to nf-test (#5393)

  Show description for 26c0d83
  

  famosab

  and

  maxulysse

  authored
  26c0d83

• port controlfreec-freec to nf-test (#5398)

  Show description for 7b5827a
  

  famosab

  and

  maxulysse

  authored
  7b5827a

• port controlfreec-assesssignificance to nf-test (#5396)

  Show description for e6c5689
  famosab

  authored
  e6c5689

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