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New module: regtools junction extract #7033

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Nov 20, 2024
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fee031a
initial commit
abartlett004 Nov 19, 2024
41fee1b
Merge branch 'master' into regtools
lpantano Nov 20, 2024
127a0ee
Merge branch 'master' into regtools
lpantano Nov 20, 2024
a0ca177
Update modules/nf-core/regtools/junctionsextract/main.nf
abartlett004 Nov 20, 2024
f2828aa
Update modules/nf-core/regtools/junctionsextract/main.nf
abartlett004 Nov 20, 2024
b69d334
Update modules/nf-core/regtools/junctionsextract/tests/main.nf.test
abartlett004 Nov 20, 2024
a6d4cc5
more recent fill file path
abartlett004 Nov 20, 2024
bc556c7
merge with remote master
abartlett004 Nov 20, 2024
8960d90
Update modules/nf-core/regtools/junctionsextract/main.nf
abartlett004 Nov 20, 2024
25a1f86
Update modules/nf-core/regtools/junctionsextract/tests/main.nf.test
abartlett004 Nov 20, 2024
7e30e85
Update modules/nf-core/regtools/junctionsextract/tests/main.nf.test
abartlett004 Nov 20, 2024
874f79c
update snapshot to include out not out.junc
abartlett004 Nov 20, 2024
94c38c3
Merge branch 'master' into regtools
abartlett004 Nov 20, 2024
213e52b
Update modules/nf-core/regtools/junctionsextract/environment.yml
abartlett004 Nov 20, 2024
cb8a955
Update modules/nf-core/regtools/junctionsextract/main.nf
abartlett004 Nov 20, 2024
bbe3ebe
Update modules/nf-core/regtools/junctionsextract/main.nf
abartlett004 Nov 20, 2024
7f83705
fix meta.yml
abartlett004 Nov 20, 2024
f970dad
Merge branch 'master' into regtools
lpantano Nov 20, 2024
a7559cb
Merge branch 'master' into regtools
lpantano Nov 20, 2024
f75790e
test: Add versions check
edmundmiller Nov 20, 2024
3a185f6
fix: Update regtools version extraction regex in junctionsextract module
edmundmiller Nov 20, 2024
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Update modules/nf-core/regtools/junctionsextract/tests/main.nf.test
Co-authored-by: Simon Pearce <[email protected]>
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abartlett004 and SPPearce authored Nov 20, 2024
commit 7e30e8544454fdcc563765f373c8cbafbe8f34be
Original file line number Diff line number Diff line change
Expand Up @@ -53,7 +53,7 @@ nextflow_process {
then {
assertAll(
{ assert process.success },
{ assert snapshot(process.out.junc).match() }
{ assert snapshot(process.out).match() }
)
}

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