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Pydamage change output file name #7095

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merged 21 commits into from
Nov 26, 2024
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Merged

Pydamage change output file name #7095

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167b9ba
added sourcepredict module
Oct 18, 2024
226c83d
Update nextflow.config
MeriamOs Oct 19, 2024
78221a3
Update main.nf.test
MeriamOs Oct 19, 2024
ca57b27
added test data for new sourcepredict module
Oct 21, 2024
47699b3
edited sourcepredict files
Oct 22, 2024
7e6d1df
fixed numba and ete3
MeriamOs Oct 23, 2024
211b30e
added test data location to test_data.config
MeriamOs Oct 24, 2024
4c9b8c2
changed paths to nf-core new test data
MeriamOs Oct 24, 2024
a744fc9
Merge branch 'master' into sourcepredict
MeriamOs Oct 24, 2024
029b4a7
fixed whitspaces
MeriamOs Oct 24, 2024
ea5be5e
fixed whitspaces
MeriamOs Oct 24, 2024
c43d89f
fixed prettier
MeriamOs Oct 24, 2024
407607c
Merge branch 'master' into sourcepredict
MeriamOs Oct 24, 2024
775b741
Update modules/nf-core/sourcepredict/main.nf
MeriamOs Oct 28, 2024
4db6fcf
Update modules/nf-core/sourcepredict/main.nf
MeriamOs Oct 28, 2024
0c49219
Update modules/nf-core/sourcepredict/main.nf
MeriamOs Oct 28, 2024
1fdbbae
Update modules/nf-core/sourcepredict/main.nf
MeriamOs Oct 28, 2024
3f6538d
Update modules/nf-core/sourcepredict/main.nf
MeriamOs Oct 28, 2024
ed8e9b4
Update modules/nf-core/sourcepredict/tests/main.nf.test
MeriamOs Oct 28, 2024
f3127f4
fixed commits after first PR
MeriamOs Oct 28, 2024
1f07284
changed output file name to prevent file collision names
MeriamOs Nov 26, 2024
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added test data location to test_data.config
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@MeriamOs
MeriamOs committed Oct 24, 2024
commit 211b30ec0bd3c091656f5aa760d9faa77d99928b
2 changes: 2 additions & 0 deletions tests/config/test_data.config
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Expand Up @@ -696,6 +696,8 @@ params {
sink_taxid_csv = "${params.test_data_base}/data/genomics/prokaryotes/metagenome/taxonomy/misc/sink_taxid.csv"
sources_taxid_csv = "${params.test_data_base}/data/genomics/prokaryotes/metagenome/taxonomy/misc/sources_labels.csv"
sources_labels_csv = "${params.test_data_base}/data/genomics/prokaryotes/metagenome/taxonomy/misc/sources_taxid.csv"
taxa_sqlite = "${params.test_data_base}/data/genomics/prokaryotes/metagenome/taxonomy/misc/taxa_sqlite.xz"
taxa_sqlite_traverse_pkl = "${params.test_data_base}/data/genomics/prokaryotes/metagenome/taxonomy/misc/taxa_sqlite_traverse.pkl"
}
}
'saccharomyces_cerevisiae' {
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