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13 stars written in Python
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Open source code for AlphaFold 2.

Python 13,093 2,316 Updated Dec 20, 2024

Panel: The powerful data exploration & web app framework for Python

Python 4,955 529 Updated Jan 17, 2025

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Python 3,379 662 Updated Feb 7, 2024

OmegaFold Release Code

Python 561 80 Updated Dec 12, 2022

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

Python 450 86 Updated Oct 9, 2024

Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein folding

Python 254 26 Updated Dec 17, 2024

dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data

Python 113 25 Updated Jan 16, 2025

Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design

Python 80 10 Updated Aug 27, 2021

Cleaning up Conda r-packages

Python 47 32 Updated Aug 10, 2024

pytorch implementation of trDesign

Python 45 3 Updated Mar 19, 2021
Python 37 7 Updated Aug 18, 2020

NetTCR-2.0. Sequence-based prediction of peptide-TCR binding

Python 33 11 Updated Mar 29, 2022

open source repository

Python 2 Updated Feb 25, 2022