This AutoHotKey script gets you all the MacOS keyboard shortcuts you love, in Windows!

Panel: The powerful data exploration & web app framework for Python

TCR and BCR assembly from RNA-seq data

A toolkit for single-cell immune profiling

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data

NetTCR-2.0. Sequence-based prediction of peptide-TCR binding

pytorch implementation of trDesign

Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design

open source repository

The Python library to create stand-alone and interactive d3 charts.

Creation of interactive networks using d3 Javascript

Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein folding

CellSNP-Vireo deconvolution pipeline, with optional genotype input.

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

Open source code for AlphaFold 2.

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

OmegaFold Release Code

Single-Cell Genotyping Tool

Cleaning up Conda r-packages

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

Go engine with no human-provided knowledge, modeled after the AlphaGo Zero paper.