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Issues list

Prevent users from submitting H&E CZI input files to IF pipeline enhancement New feature or request
#352 opened Oct 10, 2023 by philipmac
refactor all movie creation to single function.
#145 opened Jan 13, 2023 by philipmac
make nicer __repr__ __str__ methods for filepath
#153 opened Feb 16, 2023 by philipmac
investigate using mrcfile.pm for tasks such as reading header
#186 opened Apr 3, 2023 by philipmac
1
set std err and std out as files in FilePath
#190 opened Apr 13, 2023 by philipmac
GitHub Actions run of pytest has problems
#240 opened Jun 9, 2023 by mbopfNIH
@mbopfNIH
2
Add count of produced outputs to end-to-end tests
#265 opened Jul 20, 2023 by mbopfNIH
@mbopfNIH
2
update GHA to run python v3.10
#272 opened Aug 14, 2023 by philipmac
@annshress
Refactor 2D pipeline code
#279 opened Aug 23, 2023 by annshress
1
set temp dir in config using python-dotenv
#285 opened Aug 25, 2023 by philipmac
Add more unittests
#286 opened Aug 28, 2023 by annshress
1
write a teardown for pytest
#288 opened Aug 29, 2023 by philipmac
2
rm slurm logs
#78 opened Aug 17, 2022 by philipmac
@annshress
2
Reference tasks incorrect in large_2d workflow
#318 opened Sep 18, 2023 by philipmac
avoid using /tmp on compute
#371 opened Nov 8, 2023 by philipmac
1
Consider adding more "secret" params to WF API
#380 opened Nov 16, 2023 by philipmac
5
Consider defing and returning "important" settings for display on GUI
#387 opened Nov 24, 2023 by philipmac
Housekeeping on GH repo / docs / code WIP Work in Progress
#388 opened Nov 27, 2023 by philipmac
bioformats2raw still taking v long time on HPC
#391 opened Nov 29, 2023 by philipmac
1
catch bad input params to prefect API
#414 opened Dec 20, 2023 by philipmac
2
add a new page to docs benchmarking each of the compute intensive steps
#416 opened Dec 20, 2023 by philipmac
Some *internal* tasks in HPC compute node not being able to use the prefect server's api
#418 opened Dec 22, 2023 by annshress
@annshress
Update add_asset calls in all workflows?
#429 opened Jan 18, 2024 by annshress
1
test Rechunker enhancement New feature or request R&D write demo/prototype code
#451 opened Feb 12, 2024 by philipmac
1
Update logging enhancement New feature or request
#460 opened Mar 7, 2024 by annshress
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