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Issues list

Update logging enhancement New feature or request
#460 opened Mar 7, 2024 by annshress updated Mar 7, 2024
test Rechunker enhancement New feature or request R&D write demo/prototype code
#451 opened Feb 12, 2024 by philipmac updated Feb 14, 2024
1
Update docs adding pipeline callback documentation Improvements or additions to documentation
#453 opened Feb 12, 2024 by annshress updated Feb 12, 2024
see if hypothesis is useful low priority doesn't need to be implemented immediately
#452 opened Feb 12, 2024 by philipmac updated Feb 12, 2024
Add count of produced outputs to end-to-end tests
#265 opened Jul 20, 2023 by mbopfNIH updated Jan 23, 2024
@mbopfNIH
2
rm slurm logs
#78 opened Aug 17, 2022 by philipmac updated Jan 23, 2024
@annshress
2
Add more unittests
#286 opened Aug 28, 2023 by annshress updated Jan 22, 2024
1
modify callback to include failures within the flow
#97 opened Oct 4, 2022 by philipmac updated Jan 22, 2024
1
Update add_asset calls in all workflows?
#429 opened Jan 18, 2024 by annshress updated Jan 18, 2024
1
Some *internal* tasks in HPC compute node not being able to use the prefect server's api
#418 opened Dec 22, 2023 by annshress updated Dec 22, 2023
@annshress
catch bad input params to prefect API
#414 opened Dec 20, 2023 by philipmac updated Dec 22, 2023
2
add a new page to docs benchmarking each of the compute intensive steps
#416 opened Dec 20, 2023 by philipmac updated Dec 20, 2023
Consider adding more "secret" params to WF API
#380 opened Nov 16, 2023 by philipmac updated Dec 7, 2023
5
bioformats2raw still taking v long time on HPC
#391 opened Nov 29, 2023 by philipmac updated Dec 7, 2023
1
Housekeeping on GH repo / docs / code WIP Work in Progress
#388 opened Nov 27, 2023 by philipmac updated Dec 1, 2023
Consider defing and returning "important" settings for display on GUI
#387 opened Nov 24, 2023 by philipmac updated Nov 24, 2023
avoid using /tmp on compute
#371 opened Nov 8, 2023 by philipmac updated Nov 20, 2023
1
Refactor 2D pipeline code
#279 opened Aug 23, 2023 by annshress updated Nov 20, 2023
1
Prevent users from submitting H&E CZI input files to IF pipeline enhancement New feature or request
#352 opened Oct 10, 2023 by philipmac updated Oct 19, 2023
investigate using mrcfile.pm for tasks such as reading header
#186 opened Apr 3, 2023 by philipmac updated Sep 27, 2023
1
update GHA to run python v3.10
#272 opened Aug 14, 2023 by philipmac updated Sep 26, 2023
@annshress
Reference tasks incorrect in large_2d workflow
#318 opened Sep 18, 2023 by philipmac updated Sep 19, 2023
write a teardown for pytest
#288 opened Aug 29, 2023 by philipmac updated Aug 29, 2023
2
set temp dir in config using python-dotenv
#285 opened Aug 25, 2023 by philipmac updated Aug 25, 2023
GitHub Actions run of pytest has problems
#240 opened Jun 9, 2023 by mbopfNIH updated Jul 12, 2023
@mbopfNIH
2
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