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prokka: Depends on barrnap
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sjackman committed Apr 23, 2014
1 parent 140d227 commit 0069d46
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion prokka.rb
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Expand Up @@ -14,11 +14,11 @@ class Prokka < Formula
depends_on "tbl2asn"
depends_on "parallel"

depends_on "barrnap" => :recommended # fast rRNA searching using NHMMER
depends_on "infernal" => :recommended # for --rfam / non-coding RNA predictions

# These optional dependencies have no formulae.
=begin
depends_on "barrnap" => :recommended # fast rRNA searching using NHMMER
depends_on "minced" => :recommended # find CRISPRs
depends_on "rnammer" => :optional # requires patch to ensure it uses older HMMer 2.x
depends_on "signalp" => :optional # for --gram / sig_peptide predictions
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