Merge pull request #107 from mpresteg/master

Circle CI Config

Enhanced CWD and CIWD reporting (#100)

Allele drop outs and showing haplotypes when no pairs found (#93)

* modified jdk to openjdk8

* Improved ARS logic.

* Removed phycus client dependency

* Add HLAHapV to the readme

* Added HLAHapV more explicitly to the name

* Update pom.xml

* make tools available as a service

* Updated and repaired some tests failing due to mishandling of HLADB
property.

* Added full haplotype expression in summary.xml

* Made all arguments optional when normalizing frequency files.  Added
support for DRB1_DQB1 linkage / frequency combination.

* Fixed hml parsing when no gl-string provided for some loci.  Ensured
haplotype (linkage) value and full value are expressed in outputs even
if a haplotype pair is not found.

DRB1_DQB1 frequencies (#92)

* modified jdk to openjdk8

* Improved ARS logic.

* Removed phycus client dependency

* Add HLAHapV to the readme

* Added HLAHapV more explicitly to the name

* Update pom.xml

* make tools available as a service

* Updated and repaired some tests failing due to mishandling of HLADB
property.

* Added full haplotype expression in summary.xml

* Made all arguments optional when normalizing frequency files.  Added
support for DRB1_DQB1 linkage / frequency combination.

full expression of haplotypes (#91)

* modified jdk to openjdk8

* Improved ARS logic.

* Removed phycus client dependency

* Add HLAHapV to the readme

* Added HLAHapV more explicitly to the name

* Update pom.xml

* make tools available as a service

* Updated and repaired some tests failing due to mishandling of HLADB
property.

* Added full haplotype expression in summary.xml

Service Enabled (#90)

* modified jdk to openjdk8

* Improved ARS logic.

* Removed phycus client dependency

* Add HLAHapV to the readme

* Added HLAHapV more explicitly to the name

* Update pom.xml

* make tools available as a service

Merge pull request #84 from mpresteg/master

DaSH Heidelberg Updates

Merge pull request #77 from mpresteg/master

XML and directory output.  Re-enable wikiversity linkages.

Merge pull request #70 from mpresteg/master

Fixed unnecessary dependency with the HLA Frequency Loader

Merge pull request #68 from mpresteg/master

Frequency File Conversion