Merge pull request #2 from nvk747/papaa-training

Papaa training

topics/statistics/tutorials/Aberrant_PI3K_pathway_analysis/data-library.yaml

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+---
+destination:
+  type: library
+  name: GTN - Material
+  description: Galaxy Training Network Material
+  synopsis: Galaxy Training Network Material. See https://training.galaxyproject.org
+items:
+- name: The new topic
+  description: Summary
+  items:
+  - name: PAPAA:Pancancer Aberrant Pathway Activity Analysis
+    items:
+    - name: 'DOI: 10.5281/zenodo.4306639#.X9FJF-lKgZE'
+      description: latest
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+        src: url
+        ext: gz
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+        src: url
+        ext: gz
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+        src: url
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+      - url: https://zenodo.org/api/files/9c1a32d0-dba1-4481-ad9f-1aac03c83e61/cosmic_cancer_classification.tsv
+        src: url
+        ext: tsv
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+        src: url
+        ext: tsv
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+        src: url
+        ext: gz
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+        src: url
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+        src: url
+        ext: gz
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+      - url: https://zenodo.org/api/files/9c1a32d0-dba1-4481-ad9f-1aac03c83e61/GDSC_EXP_CCLE_converted_name.tsv.gz
+        src: url
+        ext: gz
+        info: https://zenodo.org/record/4306639#.X9FJF-lKgZE
+      - url: https://zenodo.org/api/files/9c1a32d0-dba1-4481-ad9f-1aac03c83e61/GSE69822_pi3k_sign.txt
+        src: url
+        ext: txt
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+      - url: https://zenodo.org/api/files/9c1a32d0-dba1-4481-ad9f-1aac03c83e61/GSE69822_pi3k_trans.csv
+        src: url
+        ext: csv
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+        src: url
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+      - url: https://zenodo.org/api/files/9c1a32d0-dba1-4481-ad9f-1aac03c83e61/GSE94937_rpkm_kras.csv
+        src: url
+        ext: csv
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+      - url: https://zenodo.org/api/files/9c1a32d0-dba1-4481-ad9f-1aac03c83e61/mc3.v0.2.8.PUBLIC.maf.gz
+        src: url
+        ext: gz
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+      - url: https://zenodo.org/api/files/9c1a32d0-dba1-4481-ad9f-1aac03c83e61/mutation_burden_freeze.tsv
+        src: url
+        ext: tsv
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+        src: url
+        ext: gz
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+        src: url
+        ext: gz
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+        src: url
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+        src: url
+        ext: txt
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+        src: url
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+        src: url
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+        src: url
+        ext: txt
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+        src: url
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+        src: url
+        ext: csv
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+      - url: https://zenodo.org/api/files/9c1a32d0-dba1-4481-ad9f-1aac03c83e61/seg_based_scores.tsv
+        src: url
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+        src: url
+        ext: tsv
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+        src: url
+        ext: tsv
+        info: https://zenodo.org/record/4306639#.X9FJF-lKgZE

topics/statistics/tutorials/Aberrant_PI3K_pathway_analysis/tutorial.bib

@@ -0,0 +1,30 @@
+
+# This is the bibliography file for your tutorial.
+#
+# To add bibliography (bibtex) entries here, follow these steps:
+#  1) Find the DOI for the article you want to cite
+#  2) Go to https://doi2bib.org and fill in the DOI
+#  3) Copy the resulting bibtex entry into this file
+#
+# To cite the example below, in your tutorial.md file
+# use {% Batut2018 %}
+
+@article{Batut2018,
+  doi = {10.1016/j.cels.2018.05.012},
+  url = {https://doi.org/10.1016/j.cels.2018.05.012},
+  year = {2018},
+  month = jun,
+  publisher = {Elsevier {BV}},
+  volume = {6},
+  number = {6},
+  pages = {752--758.e1},
+  author = {B{\'{e}}r{\'{e}}nice Batut and Saskia Hiltemann and Andrea Bagnacani and Dannon Baker and Vivek Bhardwaj and
+           Clemens Blank and Anthony Bretaudeau and Loraine Brillet-Gu{\'{e}}guen and Martin {\v{C}}ech and John Chilton
+           and Dave Clements and Olivia Doppelt-Azeroual and Anika Erxleben and Mallory Ann Freeberg and Simon Gladman and
+           Youri Hoogstrate and Hans-Rudolf Hotz and Torsten Houwaart and Pratik Jagtap and Delphine Larivi{\`{e}}re and
+           Gildas Le Corguill{\'{e}} and Thomas Manke and Fabien Mareuil and Fidel Ram{\'{i}}rez and Devon Ryan and
+           Florian Christoph Sigloch and Nicola Soranzo and Joachim Wolff and Pavankumar Videm and Markus Wolfien and
+           Aisanjiang Wubuli and Dilmurat Yusuf and James Taylor and Rolf Backofen and Anton Nekrutenko and Bj\"{o}rn Gr\"{u}ning},
+  title = {Community-Driven Data Analysis Training for Biology},
+  journal = {Cell Systems}
+}