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@RealRichardParker
RealRichardParker committed Nov 10, 2017
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@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .

@prefix ca: <http://floss.syr.edu/ontologies/2008/4/contentAnalysis.owl#> .
@prefix doap: <http://usefulinc.com/ns/doap#> .
@prefix vivo: <http://vivoweb.org/ontology/core#> .

@prefix bioj: <http://james.howison.name/ontologies/bio-journal-sample#> .
@prefix citec: <http://james.howison.name/ontologies/software-citation-coding#> .
@prefix bioj-cited: <http://james.howison.name/ontologies/bio-journal-sample-citation#> .
@prefix pmcid: <https://www.ncbi.nlm.nih.gov/pmc/articles/> .
@prefix pmcid-cited: <http://james.howison.name/ontologies/pmcid-journal-sample-citation#> .
@prefix dc: <http://dublincore.org/documents/2012/06/14/dcmi-terms/> .
#done
# https://howisonlab.github.io/softcite-pdf-files/pdf-files/pmc_oa_files/PMC4255760.pdf
pmcid:PMC4255760 rdf:type bioj:article ;

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:coded_no_in_text_mentions ;
citec:isPresent false; # true/false
] ;
] ;


citec:has_in_text_mention pmcid:PMC4255760_TZ01 ; # name in text mention like pmcid:PMC3028497_JC01, no quotes
citec:has_in_text_mention pmcid:PMC4255760_TZ02 ;
citec:has_in_text_mention pmcid:PMC4255760_TZ03 ;
.
pmcid:PMC4255760_TZ01 rdf:type citec:in_text_mention ; # use in text mention name
citec:full_quote """After electrophoresis in a 1.5% agarose gel, ethidiumbromide–stained bands were visualized by ultraviolet transillumi-nation, and the fluorescence intensity was semiquantified using aBio2239 gel analysis system (Bio-Print, Chicago, IL)""" ; # use triple quotes

citec:on_pdf_page 3 ; # integer

citec:spans_pages false ; # true/false

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:mention_type ;
rdfs:label """software""";# software | algorithm | hardware | other ; # put one in triple quotes
ca:certainty 3 ; # integer
ca:memo """Name and contexnt make Bio2239 sound like software, however googling for Bio2239 finds nothing""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:software_was_used ;
citec:isPresent true; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:software_name ;
citec:isPresent true ; # true/false
rdfs:label """Bio2239""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:version_number ;
citec:isPresent false ; # true/false
# rdfs:label FIXME ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:version_date ;
citec:isPresent false ; # true/false
# rdfs:label FIXME ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:url ;
citec:isPresent false ; # true/false
# rdfs:label FIXME ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:creator ;
citec:isPresent true ; # true/false
rdfs:label """Bio-Print""" ; # use triple quotes
] ;
] ;
# citec:has_reference pmcid-citedFIXME: ; # name reference like pmcid-cited:a2004-40-NAT_GENET_Author-YYYY, no quotes
.
pmcid:PMC4255760_TZ02 rdf:type citec:in_text_mention ; # use in text mention name
citec:full_quote """The intensity of immunohistochemical staining wasanalyzed using Image-Pro-Plus image analysis software.""" ; # use triple quotes

citec:on_pdf_page 3 ; # integer

citec:spans_pages false ; # true/false

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:mention_type ;
rdfs:label """software""";# software | algorithm | hardware | other ; # put one in triple quotes
ca:certainty 10 ; # integer
ca:memo """Image-Pro-Plus is a well knwon image analysis software, also explicit mention of word software""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:software_was_used ;
citec:isPresent true; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:software_name ;
citec:isPresent true ; # true/false
rdfs:label """Image-Pro-Plus""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:version_number ;
citec:isPresent false ; # true/false
#rdfs:label FIXME ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:version_date ;
citec:isPresent false ; # true/false
# rdfs:label FIXME ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:url ;
citec:isPresent false ; # true/false
# rdfs:label FIXME ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:creator ;
citec:isPresent false ; # true/false
#rdfs:label FIXME ; # use triple quotes
] ;
] ;
#citec:has_reference pmcid-citedFIXME: ; # name reference like pmcid-cited:a2004-40-NAT_GENET_Author-YYYY, no quotes
.
pmcid:PMC4255760_TZ03 rdf:type citec:in_text_mention ; # use in text mention name
citec:full_quote """Data were analyzed using SPSS 17.0 software (SPSS Inc,Chicago, IL) and are presented as meanstandard deviation.""" ; # use triple quotes

citec:on_pdf_page 3 ; # integer

citec:spans_pages false ; # true/false

ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:mention_type ;
rdfs:label """software""";# software | algorithm | hardware | other ; # put one in triple quotes
ca:certainty 10 ; # integer
ca:memo """SPSS is awell known statistical analysis software, explicit mention of version nuber and word software""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:software_was_used ;
citec:isPresent true; # true/false
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:software_name ;
citec:isPresent true ; # true/false
rdfs:label """SPSS""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:version_number ;
citec:isPresent true ; # true/false
rdfs:label """17.0""" ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:version_date ;
citec:isPresent false ; # true/false
# rdfs:label FIXME ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:url ;
citec:isPresent false ; # true/false
# rdfs:label FIXME ; # use triple quotes
] ;
] ;
ca:isTargetOf
[ rdf:type ca:CodeApplication ;
ca:hasCoder "realrichardparker" ;
ca:appliesCode [ rdf:type citec:creator ;
citec:isPresent true ; # true/false
rdfs:label """SPSS Inc""" ; # use triple quotes
] ;
] ;
# citec:has_reference pmcid-citedFIXME: ; # name reference like pmcid-cited:a2004-40-NAT_GENET_Author-YYYY, no quotes
.

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